Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_429

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_428 and Pf1N1B4_429 are separated by 210 nucleotidesPf1N1B4_429 and Pf1N1B4_430 are separated by 666 nucleotides Pf1N1B4_428 - Unknown, at 497,898 to 499,193 _428 Pf1N1B4_429 - FIG00964214: hypothetical protein, at 499,404 to 499,703 _429 Pf1N1B4_430 - hypothetical protein, at 500,370 to 500,486 _430 Position (kb) 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 498.478 kb on + strandat 498.587 kb on + strand, within Pf1N1B4_428at 498.587 kb on + strand, within Pf1N1B4_428at 498.610 kb on - strand, within Pf1N1B4_428at 498.635 kb on + strand, within Pf1N1B4_428at 498.645 kb on + strand, within Pf1N1B4_428at 498.646 kb on - strandat 498.646 kb on - strand, within Pf1N1B4_428at 498.726 kb on + strand, within Pf1N1B4_428at 498.726 kb on + strand, within Pf1N1B4_428at 498.727 kb on - strand, within Pf1N1B4_428at 498.727 kb on - strand, within Pf1N1B4_428at 498.728 kb on + strandat 498.728 kb on + strand, within Pf1N1B4_428at 498.728 kb on + strand, within Pf1N1B4_428at 498.728 kb on + strand, within Pf1N1B4_428at 498.729 kb on - strand, within Pf1N1B4_428at 498.729 kb on - strandat 498.729 kb on - strand, within Pf1N1B4_428at 498.729 kb on - strand, within Pf1N1B4_428at 498.742 kb on - strand, within Pf1N1B4_428at 498.742 kb on - strand, within Pf1N1B4_428at 498.762 kb on + strand, within Pf1N1B4_428at 498.762 kb on + strand, within Pf1N1B4_428at 498.762 kb on + strand, within Pf1N1B4_428at 498.762 kb on + strand, within Pf1N1B4_428at 498.763 kb on - strand, within Pf1N1B4_428at 498.763 kb on - strand, within Pf1N1B4_428at 498.774 kb on + strand, within Pf1N1B4_428at 498.775 kb on - strand, within Pf1N1B4_428at 498.775 kb on - strand, within Pf1N1B4_428at 498.830 kb on + strand, within Pf1N1B4_428at 498.918 kb on + strand, within Pf1N1B4_428at 498.918 kb on + strandat 498.948 kb on + strand, within Pf1N1B4_428at 498.948 kb on + strand, within Pf1N1B4_428at 499.049 kb on + strand, within Pf1N1B4_428at 499.049 kb on + strand, within Pf1N1B4_428at 499.049 kb on + strand, within Pf1N1B4_428at 499.049 kb on + strand, within Pf1N1B4_428at 499.050 kb on - strand, within Pf1N1B4_428at 499.050 kb on - strandat 499.051 kb on + strand, within Pf1N1B4_428at 499.051 kb on + strand, within Pf1N1B4_428at 499.051 kb on + strand, within Pf1N1B4_428at 499.051 kb on + strand, within Pf1N1B4_428at 499.052 kb on - strand, within Pf1N1B4_428at 499.052 kb on - strand, within Pf1N1B4_428at 499.052 kb on - strand, within Pf1N1B4_428at 499.058 kb on + strand, within Pf1N1B4_428at 499.064 kb on + strandat 499.065 kb on - strandat 499.065 kb on - strandat 499.065 kb on - strandat 499.068 kb on + strandat 499.068 kb on + strandat 499.068 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.071 kb on + strandat 499.079 kb on + strandat 499.191 kb on + strandat 499.627 kb on + strand, within Pf1N1B4_429at 499.628 kb on - strand, within Pf1N1B4_429at 499.655 kb on + strand, within Pf1N1B4_429at 499.655 kb on + strand, within Pf1N1B4_429at 499.655 kb on + strand, within Pf1N1B4_429at 499.656 kb on - strand, within Pf1N1B4_429at 499.737 kb on - strandat 499.750 kb on + strandat 499.750 kb on + strandat 499.763 kb on - strandat 499.788 kb on + strandat 499.789 kb on - strandat 499.789 kb on - strandat 499.863 kb on + strandat 499.903 kb on + strandat 499.903 kb on + strandat 499.904 kb on - strandat 499.904 kb on - strandat 499.962 kb on + strandat 499.962 kb on + strandat 499.962 kb on + strandat 499.962 kb on + strandat 499.963 kb on - strandat 499.972 kb on + strandat 500.094 kb on + strandat 500.094 kb on + strandat 500.094 kb on + strandat 500.095 kb on - strandat 500.095 kb on - strandat 500.104 kb on - strandat 500.111 kb on + strandat 500.129 kb on - strandat 500.235 kb on - strandat 500.338 kb on + strandat 500.386 kb on + strand, within Pf1N1B4_430at 500.387 kb on - strand, within Pf1N1B4_430at 500.387 kb on - strand, within Pf1N1B4_430at 500.416 kb on - strand, within Pf1N1B4_430at 500.416 kb on - strand, within Pf1N1B4_430at 500.515 kb on + strandat 500.560 kb on + strandat 500.613 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.615 kb on + strandat 500.616 kb on - strandat 500.616 kb on - strandat 500.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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498,478 + -0.0
498,587 + Pf1N1B4_428 0.53 +1.0
498,587 + Pf1N1B4_428 0.53 +1.2
498,610 - Pf1N1B4_428 0.55 +0.1
498,635 + Pf1N1B4_428 0.57 +1.5
498,645 + Pf1N1B4_428 0.58 -1.8
498,646 - +0.8
498,646 - Pf1N1B4_428 0.58 +0.6
498,726 + Pf1N1B4_428 0.64 -0.1
498,726 + Pf1N1B4_428 0.64 -0.5
498,727 - Pf1N1B4_428 0.64 +0.2
498,727 - Pf1N1B4_428 0.64 -0.6
498,728 + -0.6
498,728 + Pf1N1B4_428 0.64 -1.2
498,728 + Pf1N1B4_428 0.64 -0.7
498,728 + Pf1N1B4_428 0.64 -2.2
498,729 - Pf1N1B4_428 0.64 -0.2
498,729 - -0.2
498,729 - Pf1N1B4_428 0.64 -0.0
498,729 - Pf1N1B4_428 0.64 -1.5
498,742 - Pf1N1B4_428 0.65 -0.0
498,742 - Pf1N1B4_428 0.65 -0.3
498,762 + Pf1N1B4_428 0.67 -0.0
498,762 + Pf1N1B4_428 0.67 -0.0
498,762 + Pf1N1B4_428 0.67 +0.4
498,762 + Pf1N1B4_428 0.67 +0.9
498,763 - Pf1N1B4_428 0.67 -1.2
498,763 - Pf1N1B4_428 0.67 -2.1
498,774 + Pf1N1B4_428 0.68 -1.3
498,775 - Pf1N1B4_428 0.68 +0.9
498,775 - Pf1N1B4_428 0.68 -0.4
498,830 + Pf1N1B4_428 0.72 +0.1
498,918 + Pf1N1B4_428 0.79 -1.0
498,918 + +0.6
498,948 + Pf1N1B4_428 0.81 -0.3
498,948 + Pf1N1B4_428 0.81 -0.1
499,049 + Pf1N1B4_428 0.89 -0.0
499,049 + Pf1N1B4_428 0.89 -0.2
499,049 + Pf1N1B4_428 0.89 -2.1
499,049 + Pf1N1B4_428 0.89 -0.5
499,050 - Pf1N1B4_428 0.89 -1.1
499,050 - +0.6
499,051 + Pf1N1B4_428 0.89 +0.1
499,051 + Pf1N1B4_428 0.89 +0.9
499,051 + Pf1N1B4_428 0.89 -2.3
499,051 + Pf1N1B4_428 0.89 -0.6
499,052 - Pf1N1B4_428 0.89 +1.0
499,052 - Pf1N1B4_428 0.89 +1.3
499,052 - Pf1N1B4_428 0.89 +0.4
499,058 + Pf1N1B4_428 0.90 -0.7
499,064 + +0.5
499,065 - -0.3
499,065 - -0.8
499,065 - -0.0
499,068 + -0.8
499,068 + -0.4
499,068 + +1.7
499,071 + -1.3
499,071 + -0.8
499,071 + -1.5
499,071 + +0.2
499,071 + +0.3
499,071 + -0.5
499,071 + -0.5
499,071 + +0.1
499,071 + -0.9
499,071 + -0.7
499,071 + -2.3
499,071 + -1.2
499,079 + -1.8
499,191 + +2.0
499,627 + Pf1N1B4_429 0.74 -0.7
499,628 - Pf1N1B4_429 0.75 -0.2
499,655 + Pf1N1B4_429 0.84 -0.8
499,655 + Pf1N1B4_429 0.84 -0.5
499,655 + Pf1N1B4_429 0.84 -1.0
499,656 - Pf1N1B4_429 0.84 -1.0
499,737 - -0.0
499,750 + -0.5
499,750 + -1.8
499,763 - +2.0
499,788 + +1.6
499,789 - -0.2
499,789 - -1.2
499,863 + -0.8
499,903 + +0.5
499,903 + +0.6
499,904 - +0.2
499,904 - -0.7
499,962 + +0.4
499,962 + +0.2
499,962 + -0.7
499,962 + +1.6
499,963 - +0.8
499,972 + +0.6
500,094 + +0.5
500,094 + +0.1
500,094 + -0.3
500,095 - +0.6
500,095 - +0.0
500,104 - +1.4
500,111 + +1.6
500,129 - +1.0
500,235 - -1.4
500,338 + +0.2
500,386 + Pf1N1B4_430 0.14 +1.1
500,387 - Pf1N1B4_430 0.15 -2.2
500,387 - Pf1N1B4_430 0.15 -3.1
500,416 - Pf1N1B4_430 0.39 -0.7
500,416 - Pf1N1B4_430 0.39 -1.5
500,515 + -0.5
500,560 + +0.8
500,613 + +1.0
500,615 + +1.0
500,615 + +0.9
500,615 + -1.7
500,615 + +0.9
500,615 + +1.4
500,615 + +0.7
500,615 + +0.1
500,616 - -0.5
500,616 - -1.5
500,616 - +1.6

Or see this region's nucleotide sequence