Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4631

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
6,061,315	+		BT4630	0.64	-1.9
6,061,334	+		BT4630	0.66	-0.1
6,061,335	-		BT4630	0.66	-0.3
6,061,457	-		BT4630	0.74	-0.7
6,061,510	+		BT4630	0.77	-2.4
6,061,514	+		BT4630	0.77	+0.7
6,061,521	+		BT4630	0.78	-0.7
6,061,542	-		BT4630	0.79	-0.7
6,061,545	-		BT4630	0.79	+1.0
6,061,547	+		BT4630	0.79	-3.5
6,061,547	+		BT4630	0.79	-0.5
6,061,699	+		BT4630	0.89	-2.9
6,061,706	-		BT4630	0.90	+0.9
6,061,706	-		BT4630	0.90	-2.8
6,061,794	+				-0.7
6,061,846	-				+1.5
6,061,856	-				+0.0
6,061,863	+				-1.0
6,061,888	+				+0.3
6,061,888	+				+0.1
6,061,891	+				-0.7
6,061,899	+				+0.3
6,061,964	+				+0.3
6,061,972	+				-1.8
6,062,030	+				-2.2
6,062,030	+				-0.3
6,062,041	-				-1.9
6,062,074	+				-1.1
6,062,093	+				-0.1
6,062,093	+				-0.7
6,062,093	+				-2.9
6,062,093	+				-2.2
6,062,096	-				-0.0
6,062,144	+				-0.1
6,062,146	+				-0.7
6,062,191	+				-0.4
6,062,197	+				-0.7
6,062,215	+				-1.7
6,062,306	+				+1.2
6,062,307	-				-0.3
6,062,372	+				-1.3
6,062,462	+		BT4631	0.12	-0.7
6,062,464	+				+0.3
6,062,586	-		BT4631	0.20	-1.1
6,062,694	+		BT4631	0.27	-1.7
6,062,694	+		BT4631	0.27	-1.3
6,062,695	-		BT4631	0.27	+0.6
6,062,800	+		BT4631	0.34	-2.1
6,062,801	-		BT4631	0.34	-1.0
6,062,913	+		BT4631	0.41	-1.0
6,062,985	+		BT4631	0.46	+0.3
6,062,986	-		BT4631	0.46	-0.3
6,063,139	-		BT4631	0.56	-1.3
6,063,178	+		BT4631	0.58	-1.9
6,063,262	+		BT4631	0.63	-1.9
6,063,262	+		BT4631	0.63	-0.9
6,063,289	+		BT4631	0.65	-2.0
6,063,346	-		BT4631	0.69	-1.3
6,063,367	-		BT4631	0.70	-1.0
6,063,411	+		BT4631	0.73	-1.5
6,063,411	+		BT4631	0.73	-1.5
6,063,422	+		BT4631	0.74	-1.7
6,063,422	+		BT4631	0.74	-1.0
6,063,442	+		BT4631	0.75	-0.7
6,063,471	-		BT4631	0.77	-0.7
6,063,471	-		BT4631	0.77	-0.5
6,063,471	-		BT4631	0.77	-1.5
6,063,475	+		BT4631	0.77	-2.9
6,063,476	-		BT4631	0.77	+2.9
6,063,492	+		BT4631	0.78	-0.9
6,063,493	-		BT4631	0.78	+0.7
6,063,525	-		BT4631	0.80	-1.7
6,063,544	+		BT4631	0.81	-1.8
6,063,544	+		BT4631	0.81	-2.5
6,063,584	+		BT4631	0.84	+0.3
6,063,600	+		BT4631	0.85	-1.9
6,063,609	-		BT4631	0.86	-1.5
6,063,616	-		BT4631	0.86	-1.0
6,063,618	-		BT4631	0.86	-2.4
6,063,640	-		BT4631	0.88	+0.2
6,063,655	-		BT4631	0.89	+0.7
6,063,655	-		BT4631	0.89	-1.9
6,063,655	-		BT4631	0.89	-0.2
6,063,764	-				-0.7
6,063,786	+				-0.7
6,063,787	-				+0.6
6,063,787	-				-0.3
6,063,787	-				+0.2
6,063,989	-				+0.6
6,063,989	-				+0.7
6,064,059	+		BT4632	0.14	-1.5
6,064,098	+		BT4632	0.17	-1.0
6,064,123	-		BT4632	0.19	+0.5
6,064,167	+		BT4632	0.22	-3.3
6,064,167	+		BT4632	0.22	-1.0
6,064,168	-		BT4632	0.22	-1.0
6,064,186	+		BT4632	0.23	+0.5
6,064,226	+		BT4632	0.26	-2.5
6,064,230	+		BT4632	0.27	-1.9
6,064,254	-		BT4632	0.28	-0.9
6,064,320	+		BT4632	0.33	-2.2
6,064,411	-		BT4632	0.40	-0.4
6,064,435	-		BT4632	0.42	+0.3
6,064,525	-		BT4632	0.49	-0.5
6,064,527	-		BT4632	0.49	-0.7
6,064,652	-		BT4632	0.58	-0.0
6,064,662	+		BT4632	0.59	+1.3
6,064,662	+		BT4632	0.59	+0.3
6,064,663	-		BT4632	0.59	-1.0
6,064,681	+		BT4632	0.60	-1.5
6,064,686	+		BT4632	0.61	-0.1
6,064,687	-		BT4632	0.61	-0.3
6,064,688	+		BT4632	0.61	-1.3
6,064,688	+		BT4632	0.61	-0.3
6,064,708	-		BT4632	0.62	-3.1
6,064,716	+		BT4632	0.63	-1.8
6,064,717	-		BT4632	0.63	-0.7
6,064,717	-		BT4632	0.63	-1.7
6,064,731	+		BT4632	0.64	-1.3
6,064,749	+		BT4632	0.66	-0.8
6,064,749	+		BT4632	0.66	-0.8
6,064,750	-		BT4632	0.66	-0.3
6,064,750	-		BT4632	0.66	-2.4