Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4508

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
5,922,135	+				+1.3
5,922,181	+		BT4507	0.11	-1.0
5,922,181	+		BT4507	0.11	-1.3
5,922,182	-		BT4507	0.11	-1.5
5,922,183	+		BT4507	0.11	+1.5
5,922,184	-		BT4507	0.12	+0.2
5,922,184	-		BT4507	0.12	-2.0
5,922,189	-		BT4507	0.12	-0.3
5,922,189	-		BT4507	0.12	-2.3
5,922,371	+		BT4507	0.33	+0.2
5,922,372	-		BT4507	0.33	-3.6
5,922,627	-		BT4507	0.62	-1.3
5,922,743	+		BT4507	0.75	+0.3
5,922,779	-		BT4507	0.79	-0.6
5,922,818	-		BT4507	0.83	+1.5
5,922,921	+				-2.3
5,922,922	-				-1.3
5,922,990	-				-0.6
5,923,017	+				-0.5
5,923,018	-				+0.9
5,923,030	+				-1.3
5,923,055	-				+1.3
5,923,063	+				-1.4
5,923,064	-				-1.0
5,923,111	+				+0.3
5,923,118	+				-1.0
5,923,201	-				-2.2
5,923,201	-				-1.0
5,923,202	+				-1.3
5,923,252	+		BT4508	0.11	-0.4
5,923,256	+		BT4508	0.12	-1.3
5,923,256	+		BT4508	0.12	-2.0
5,923,257	-		BT4508	0.12	-0.7
5,923,282	-		BT4508	0.14	-1.0
5,923,282	-		BT4508	0.14	-0.3
5,923,363	-		BT4508	0.20	-0.5
5,923,366	+		BT4508	0.21	-0.7
5,923,366	+		BT4508	0.21	-1.0
5,923,461	+		BT4508	0.28	+0.3
5,923,589	+		BT4508	0.39	+0.1
5,923,589	+		BT4508	0.39	-1.7
5,923,589	+		BT4508	0.39	-0.7
5,923,596	+		BT4508	0.39	-2.3
5,923,715	+		BT4508	0.49	-1.3
5,923,728	+		BT4508	0.50	-0.3
5,923,732	+		BT4508	0.50	-2.2
5,923,751	+		BT4508	0.52	-2.2
5,923,783	+		BT4508	0.55	+1.0
5,923,899	+		BT4508	0.64	-1.3
5,923,899	+		BT4508	0.64	-0.5
5,923,918	+		BT4508	0.66	-0.7
5,923,921	-		BT4508	0.66	-0.3
5,923,967	+		BT4508	0.70	-1.2
5,924,069	-		BT4508	0.78	+1.7
5,924,073	+		BT4508	0.78	+0.2
5,924,074	-		BT4508	0.78	+1.6
5,924,166	+		BT4508	0.86	-0.7
5,924,167	-		BT4508	0.86	-1.3
5,924,239	-				-0.6
5,924,250	+				-0.1
5,924,251	-				-0.4
5,924,312	-				-0.3
5,924,334	+				-0.5
5,924,365	-				-0.7
5,924,365	-				-2.2
5,924,365	-				+1.0
5,924,365	-				-1.5
5,924,471	-				+0.2
5,924,492	+				-2.3
5,924,492	+				-3.0
5,924,493	-				-0.5
5,924,641	-		BT4509	0.14	-0.7
5,924,644	+		BT4509	0.14	-1.7
5,924,645	-		BT4509	0.15	-1.0
5,924,645	-		BT4509	0.15	-0.8
5,924,645	-		BT4509	0.15	-2.4
5,924,666	+		BT4509	0.17	-0.1
5,924,683	-		BT4509	0.19	+0.3
5,924,702	-		BT4509	0.21	-1.3
5,924,773	+		BT4509	0.29	-2.6
5,924,774	-		BT4509	0.29	+0.3
5,924,847	+		BT4509	0.37	-3.3
5,924,866	+		BT4509	0.39	-1.0
5,924,881	-		BT4509	0.41	-1.5
5,924,886	-		BT4509	0.41	-0.3
5,925,026	+		BT4509	0.57	-2.6
5,925,026	+		BT4509	0.57	+0.3
5,925,105	+		BT4509	0.66	-2.1
5,925,110	+		BT4509	0.67	-0.7
5,925,110	+		BT4509	0.67	-0.3
5,925,259	+		BT4509	0.83	-3.4
5,925,260	-		BT4509	0.83	-2.0
5,925,260	-		BT4509	0.83	-1.9
5,925,275	-		BT4509	0.85	-3.6
5,925,330	-				+0.8