Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4448

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
5,858,361	+				+0.1
5,858,361	+				-1.5
5,858,366	-				+1.3
5,858,391	+				-0.2
5,858,427	-				-1.8
5,858,621	-		BT4447	0.32	-0.5
5,858,825	-		BT4447	0.60	-1.9
5,858,984	-		BT4447	0.82	-2.1
5,858,984	-		BT4447	0.82	+1.9
5,859,089	+				-1.1
5,859,262	+				-0.9
5,859,311	+				-1.0
5,859,337	+				-0.3
5,860,638	+				-1.5
5,860,798	-				-1.9
5,860,821	-				-0.7
5,860,828	-				-1.1
5,860,831	+				-0.1
5,860,935	-				-0.9
5,860,935	-				+1.3
5,861,040	+		BT4449	0.19	-0.3
5,861,182	+		BT4449	0.33	-2.2
5,861,306	+		BT4449	0.44	-1.5
5,861,335	+		BT4449	0.47	-1.7
5,861,367	+		BT4449	0.50	-2.3
5,861,371	+				-0.3
5,861,372	-		BT4449	0.50	+0.3
5,861,493	-		BT4449	0.62	+0.3
5,861,599	-		BT4449	0.72	+0.3
5,861,630	+		BT4449	0.75	-2.2
5,861,631	-		BT4449	0.75	+1.3