Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4446

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
5,856,596	-		BT4445	0.51	-1.4
5,856,602	-		BT4445	0.52	-2.2
5,856,610	+		BT4445	0.52	-0.6
5,856,678	+		BT4445	0.56	-1.2
5,856,682	+		BT4445	0.56	-0.2
5,856,692	-		BT4445	0.57	+0.3
5,856,692	-		BT4445	0.57	+0.7
5,856,754	+		BT4445	0.61	-1.1
5,856,755	-		BT4445	0.61	-1.3
5,856,769	-		BT4445	0.61	-1.3
5,856,769	-		BT4445	0.61	+0.3
5,856,773	+		BT4445	0.62	-0.7
5,856,774	-		BT4445	0.62	-2.4
5,856,774	-		BT4445	0.62	-0.7
5,856,871	+		BT4445	0.67	+0.3
5,856,877	+		BT4445	0.68	+0.7
5,856,882	-		BT4445	0.68	+2.7
5,856,901	+		BT4445	0.69	-1.7
5,856,923	-		BT4445	0.70	+1.3
5,856,932	+		BT4445	0.71	-2.4
5,856,943	-		BT4445	0.72	+0.3
5,857,144	+		BT4445	0.83	-1.5
5,857,144	+		BT4445	0.83	-0.7
5,857,145	-		BT4445	0.83	-0.6
5,857,221	-		BT4445	0.88	-0.1
5,857,223	-		BT4445	0.88	-0.1
5,857,236	+		BT4445	0.89	-3.5
5,857,251	-		BT4445	0.90	-0.7
5,857,253	+		BT4445	0.90	-0.7
5,857,281	+				-0.1
5,857,357	+				-1.7
5,857,361	+				-0.3
5,857,385	+				+0.1
5,857,385	+				+0.5
5,857,385	+				-0.1
5,857,385	+				-2.3
5,857,386	-				+0.3
5,857,386	-				+2.1
5,857,387	+				+0.6
5,857,387	+				-1.9
5,857,424	+				-2.4
5,857,425	-				-0.8
5,857,428	-				+0.3
5,857,463	+				-1.9
5,857,498	+				-1.5
5,857,499	-				-1.9
5,857,509	-				+0.7
5,857,509	-				-1.7
5,857,513	+				-0.6
5,857,514	-				-0.5
5,857,547	-				-0.1
5,857,576	-				+0.6
5,857,588	+				+0.0
5,857,597	-		BT4446	0.11	+1.3
5,857,610	+		BT4446	0.12	+0.0
5,857,610	+		BT4446	0.12	-1.1
5,857,611	-		BT4446	0.12	-0.6
5,857,611	-		BT4446	0.12	-2.3
5,857,618	-		BT4446	0.13	-0.8
5,857,647	-		BT4446	0.16	-1.3
5,857,647	-		BT4446	0.16	-1.5
5,857,665	-		BT4446	0.18	+0.2
5,857,665	-		BT4446	0.18	-0.6
5,857,670	+		BT4446	0.19	+1.3
5,857,774	-		BT4446	0.31	-1.6
5,857,774	-		BT4446	0.31	-0.7
5,857,796	-		BT4446	0.33	-2.7
5,857,820	+		BT4446	0.36	+0.7
5,857,822	+		BT4446	0.36	-1.2
5,857,822	+		BT4446	0.36	+0.3
5,857,823	-		BT4446	0.36	-0.0
5,857,875	-		BT4446	0.42	-0.7
5,857,986	+		BT4446	0.54	-0.9
5,857,994	-		BT4446	0.55	-1.7
5,858,012	+		BT4446	0.57	-1.7
5,858,112	+		BT4446	0.69	-1.3
5,858,113	-		BT4446	0.69	-1.2
5,858,145	-		BT4446	0.72	-0.3
5,858,185	+		BT4446	0.77	+2.3
5,858,210	-		BT4446	0.80	+0.3
5,858,239	-		BT4446	0.83	-0.7
5,858,263	-		BT4446	0.86	-1.7
5,858,290	-		BT4446	0.89	-1.1
5,858,361	+				+0.1
5,858,361	+				-1.5
5,858,366	-				+1.3
5,858,391	+				-0.2
5,858,427	-				-1.8
5,858,621	-		BT4447	0.32	-0.5
5,858,825	-		BT4447	0.60	-1.9
5,858,984	-		BT4447	0.82	-2.1
5,858,984	-		BT4447	0.82	+1.9
5,859,089	+				-1.1
5,859,262	+				-0.9
5,859,311	+				-1.0
5,859,337	+				-0.3