Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3185

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
4,073,468	-		BT3184	0.47	-1.7
4,073,505	-		BT3184	0.49	-1.9
4,073,565	+		BT3184	0.53	-1.8
4,073,566	+		BT3184	0.53	-3.3
4,073,566	+		BT3184	0.53	-1.2
4,073,612	+		BT3184	0.56	-1.3
4,073,627	-		BT3184	0.57	-2.3
4,073,691	+		BT3184	0.61	-2.6
4,073,709	-		BT3184	0.62	-1.9
4,073,728	+		BT3184	0.63	-3.0
4,073,729	-		BT3184	0.63	-1.0
4,073,729	-		BT3184	0.63	-4.2
4,073,732	+		BT3184	0.63	-1.5
4,073,732	+		BT3184	0.63	-0.7
4,073,732	+		BT3184	0.63	-3.6
4,073,732	+		BT3184	0.63	-4.4
4,073,732	+		BT3184	0.63	-2.5
4,073,732	+		BT3184	0.63	-4.0
4,073,764	+		BT3184	0.66	-1.6
4,073,833	-		BT3184	0.70	-1.5
4,073,924	+		BT3184	0.76	-2.0
4,073,925	-		BT3184	0.76	-2.4
4,073,931	-		BT3184	0.76	-2.2
4,074,131	+		BT3184	0.89	-1.2
4,074,182	+				-0.4
4,074,182	+				-2.3
4,074,183	-				-2.8
4,074,183	-				-2.3
4,074,213	-				-2.2
4,074,301	-				-1.6
4,074,340	+				-0.5
4,074,477	+		BT3185	0.16	-0.8
4,074,507	-		BT3185	0.24	-1.0
4,074,546	+		BT3185	0.34	+0.6
4,074,562	+		BT3185	0.38	-0.8
4,074,563	-		BT3185	0.38	-0.8
4,074,575	+		BT3185	0.41	-0.4
4,074,643	+		BT3185	0.58	-0.1
4,074,643	+		BT3185	0.58	+0.2
4,074,643	+		BT3185	0.58	-0.8
4,074,662	-		BT3185	0.63	+1.0
4,074,710	+		BT3185	0.75	+0.5
4,074,814	-				-0.9
4,074,819	+				-0.2
4,074,827	-				-1.2
4,074,864	+				-2.3
4,074,864	+				-0.5
4,074,864	+				-0.5
4,074,865	-				-0.6
4,074,865	-				-2.3
4,074,865	-				-1.6
4,074,902	+				-3.2
4,074,921	+				+0.5
4,074,992	-		BT3186	0.13	-0.8
4,075,098	-		BT3186	0.21	-2.7
4,075,164	-		BT3186	0.26	+1.0
4,075,167	+		BT3186	0.26	+0.3
4,075,168	-		BT3186	0.26	-1.5
4,075,199	-		BT3186	0.28	-1.4
4,075,335	-		BT3186	0.38	+0.5
4,075,469	-		BT3186	0.48	-0.8
4,075,504	-		BT3186	0.51	-0.0
4,075,517	+		BT3186	0.52	+0.3
4,075,518	-		BT3186	0.52	-2.2
4,075,549	+		BT3186	0.54	-0.5
4,075,787	+		BT3186	0.72	-1.5
4,075,787	+		BT3186	0.72	-1.5
4,075,794	+		BT3186	0.72	-0.1