Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2627

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
3,275,148	-		BT2626	0.69	-1.4
3,275,173	+		BT2626	0.70	-0.4
3,275,173	+		BT2626	0.70	-2.2
3,275,173	+		BT2626	0.70	-1.1
3,275,173	+		BT2626	0.70	+1.5
3,275,173	+		BT2626	0.70	+1.5
3,275,173	+		BT2626	0.70	-0.5
3,275,173	+		BT2626	0.70	-3.1
3,275,173	+		BT2626	0.70	-2.4
3,275,174	-		BT2626	0.70	-2.0
3,275,174	-		BT2626	0.70	+1.0
3,275,264	-		BT2626	0.73	-1.8
3,275,265	+		BT2626	0.73	-0.5
3,275,273	+		BT2626	0.73	-0.5
3,275,281	+		BT2626	0.73	-0.3
3,275,281	+		BT2626	0.73	+0.2
3,275,283	+		BT2626	0.73	-0.5
3,275,338	+		BT2626	0.75	-2.4
3,275,338	+		BT2626	0.75	-1.4
3,275,339	-		BT2626	0.75	-1.2
3,275,350	+		BT2626	0.75	+0.3
3,275,463	+		BT2626	0.79	-1.3
3,275,463	+		BT2626	0.79	+1.5
3,275,463	+		BT2626	0.79	-0.3
3,275,464	-		BT2626	0.79	+0.5
3,275,472	+		BT2626	0.79	-3.0
3,275,472	+		BT2626	0.79	-0.5
3,275,472	+		BT2626	0.79	-1.4
3,275,646	-		BT2626	0.85	-1.1
3,275,694	-		BT2626	0.87	-2.1
3,275,697	-		BT2626	0.87	-0.9
3,275,714	+		BT2626	0.87	-0.5
3,275,740	-		BT2626	0.88	-0.5
3,275,748	+		BT2626	0.88	-2.8
3,275,883	-				-0.4
3,275,892	+				-1.1
3,275,893	-				+0.6
3,275,898	+				-2.0
3,275,898	+				+0.5
3,275,899	-				-2.1
3,275,939	+				-0.9
3,275,939	+				-3.3
3,276,016	+				+1.2
3,276,016	+				-1.7
3,276,016	+				+0.1
3,276,018	-				+0.8
3,276,065	+				-0.1
3,276,065	+				+0.5
3,276,065	+				-1.2
3,276,069	+				-1.1
3,276,069	+				-0.9
3,276,069	+				+0.3
3,276,070	-				-0.9
3,276,070	-				+0.1
3,276,070	-				-0.1
3,276,076	-				-2.0
3,276,081	+				-0.3
3,276,084	+				-2.0
3,276,085	-				+0.5
3,276,085	-				+1.3
3,276,090	+				+0.6
3,276,114	+				-1.0
3,276,155	+				-2.0
3,276,161	+				+0.1
3,276,165	+				-2.4
3,276,165	+				-0.1
3,276,180	+				-1.9
3,276,193	+				+0.5
3,276,227	+				-0.1
3,276,248	+				-0.1
3,276,268	+				-1.1
3,276,306	+				+1.5
3,276,317	+		BT2627	0.13	-1.1
3,276,332	+		BT2627	0.14	-1.1
3,276,358	+		BT2627	0.16	-0.1
3,276,358	+		BT2627	0.16	-0.0
3,276,401	+		BT2627	0.20	-1.1
3,276,483	+		BT2627	0.26	-0.6
3,276,494	+		BT2627	0.27	-0.5
3,276,522	+		BT2627	0.29	-2.0
3,276,524	+		BT2627	0.29	-0.1
3,276,528	+		BT2627	0.29	-1.5
3,276,566	+		BT2627	0.32	-0.1
3,276,566	+		BT2627	0.32	-0.1
3,276,572	+		BT2627	0.33	-0.1
3,276,575	+		BT2627	0.33	+0.3
3,276,622	-		BT2627	0.37	-1.0
3,276,630	+		BT2627	0.37	-2.0
3,276,643	+		BT2627	0.38	+0.1
3,276,643	+		BT2627	0.38	+0.8
3,276,655	+		BT2627	0.39	-0.4
3,276,655	+		BT2627	0.39	+0.8
3,276,662	+		BT2627	0.40	+0.3
3,276,665	+		BT2627	0.40	-1.0
3,276,665	+		BT2627	0.40	-2.6
3,276,665	+		BT2627	0.40	+0.5
3,276,665	+		BT2627	0.40	-0.1
3,276,665	+		BT2627	0.40	-1.1
3,276,688	+		BT2627	0.42	-1.5
3,276,768	-		BT2627	0.48	-2.1
3,276,806	+		BT2627	0.51	-1.9
3,276,819	+		BT2627	0.52	-0.1
3,276,825	+		BT2627	0.52	-1.4
3,276,827	+		BT2627	0.52	-0.1
3,276,831	+		BT2627	0.53	-0.0
3,276,831	+		BT2627	0.53	-1.9
3,276,897	+		BT2627	0.58	-0.2
3,277,070	+		BT2627	0.71	-1.7
3,277,070	+		BT2627	0.71	+0.0
3,277,093	-		BT2627	0.73	-0.2
3,277,094	+		BT2627	0.73	+0.3
3,277,149	+		BT2627	0.77	-0.8
3,277,190	+		BT2627	0.80	-1.0
3,277,190	+		BT2627	0.80	+1.9
3,277,191	-		BT2627	0.80	+1.5
3,277,196	+				-1.9
3,277,292	+		BT2627	0.88	+0.5
3,277,354	+				-2.0
3,277,379	+				+1.5
3,277,380	-				-0.4
3,277,380	-				-0.1
3,277,415	+				+0.1
3,277,478	+				-0.4
3,277,603	+				-3.0
3,277,644	+				-1.7
3,277,648	+				-0.7
3,277,648	+				+0.4
3,277,684	+				-2.1
3,277,727	+				-0.3
3,277,753	+				+0.6
3,277,753	+				-1.8
3,277,801	+				+1.5
3,277,801	+				-0.1
3,277,827	+				-0.5
3,277,868	+				+0.2
3,277,868	+				+3.0
3,277,868	+				+0.5
3,277,872	+				-1.9
3,277,887	+				-0.7
3,277,908	+				-0.5
3,277,908	+				+1.5
3,277,908	+				-2.2
3,277,921	+				+0.6
3,277,940	+				-1.9
3,277,983	+				-2.2
3,278,143	+				-1.8
3,278,143	+				+0.6
3,278,201	+				-0.1
3,278,201	+				+0.0
3,278,201	+				-0.7
3,278,227	+				+1.0
3,278,227	+				-2.1
3,278,232	+				+2.5
3,278,260	+				-1.5
3,278,260	+				-1.0
3,278,260	+				-0.9
3,278,333	+				-1.7
3,278,397	+		BT2628	0.11	-1.6
3,278,397	+		BT2628	0.11	+0.4
3,278,414	+		BT2628	0.12	+0.9