Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1791

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
2,237,694	+				-0.1
2,237,707	-				-1.1
2,237,709	-				-1.5
2,237,722	-				+0.9
2,237,748	-		BT1790	0.14	+0.7
2,237,780	+		BT1790	0.24	+0.5
2,237,841	+		BT1790	0.44	-1.3
2,237,842	-		BT1790	0.44	-1.0
2,237,849	+		BT1790	0.47	-1.1
2,237,849	+		BT1790	0.47	-1.3
2,237,890	+		BT1790	0.60	+0.4
2,237,890	+		BT1790	0.60	-0.1
2,237,938	+		BT1790	0.75	-1.0
2,238,018	+				+0.6
2,238,030	+				-2.4
2,238,128	-				-1.7
2,238,133	+				-1.5
2,238,136	-				-1.9
2,238,142	-				-2.1
2,238,155	-				-1.1
2,238,155	-				-1.3
2,238,156	+				-0.8
2,238,174	+				+1.3
2,238,175	-				-1.7
2,238,196	+				+0.7
2,238,224	+				-1.6
2,238,315	+				+0.8
2,238,362	-				-0.7
2,238,389	+				+0.3
2,238,390	-				-2.7
2,238,426	-				+3.3
2,238,426	-				-1.3
2,238,432	-				+1.3
2,238,432	-				+0.4
2,238,460	+				+0.7
2,238,512	+				-0.3
2,238,512	+				-0.8
2,238,519	-				-0.5
2,238,547	+				-2.6
2,238,599	+				-0.0
2,238,660	-		BT1791	0.13	+1.3
2,238,755	+		BT1791	0.21	-0.3
2,238,756	-		BT1791	0.21	-0.3
2,238,776	+		BT1791	0.23	-1.0
2,238,862	-		BT1791	0.30	-0.8
2,238,898	-		BT1791	0.33	-0.7
2,238,923	-		BT1791	0.35	+0.9
2,239,001	+		BT1791	0.42	-0.4
2,239,066	-		BT1791	0.47	-0.3
2,239,067	+		BT1791	0.48	-3.3
2,239,225	+		BT1791	0.61	-2.5
2,239,290	+		BT1791	0.66	+0.9
2,239,290	+		BT1791	0.66	-1.5
2,239,293	-		BT1791	0.66	-1.0
2,239,295	+		BT1791	0.67	+0.8
2,239,306	+		BT1791	0.68	-2.1
2,239,307	-		BT1791	0.68	+0.8
2,239,312	+		BT1791	0.68	-2.7
2,239,318	+		BT1791	0.69	+1.4
2,239,318	+		BT1791	0.69	-1.6
2,239,395	-		BT1791	0.75	+1.3
2,239,403	-		BT1791	0.76	+0.5
2,239,464	-		BT1791	0.81	-0.2
2,239,465	+		BT1791	0.81	-0.7
2,239,465	+		BT1791	0.81	-1.7
2,239,465	+		BT1791	0.81	-1.3
2,239,466	-		BT1791	0.81	+0.3
2,239,606	-				+0.1
2,239,628	+				-0.0
2,239,673	-				-0.3
2,239,673	-				-0.3
2,239,692	+				-1.3
2,239,693	-				+0.2
2,239,698	-				-2.0
2,239,731	+				-3.7
2,239,732	-				-1.7
2,239,766	+				-1.2
2,239,780	-				-0.7
2,239,807	-				+0.1
2,239,922	+				-1.0
2,239,923	-				-2.2
2,239,992	-				+0.1
2,240,057	+				+0.7
2,240,099	-				-1.1
2,240,143	+				-0.7
2,240,240	+		BT1792	0.12	-3.8
2,240,240	+		BT1792	0.12	-1.9
2,240,285	-		BT1792	0.14	-0.7
2,240,286	+		BT1792	0.14	-2.4
2,240,286	+		BT1792	0.14	-2.3
2,240,287	-		BT1792	0.14	-0.5
2,240,323	-		BT1792	0.15	-0.7
2,240,329	-		BT1792	0.15	+1.3
2,240,333	+		BT1792	0.16	-0.7
2,240,333	+		BT1792	0.16	+0.3
2,240,403	-		BT1792	0.18	-1.5
2,240,422	-		BT1792	0.19	+1.3
2,240,473	+		BT1792	0.20	+0.5
2,240,482	-		BT1792	0.20	+0.1
2,240,497	+		BT1792	0.21	-3.0
2,240,498	-		BT1792	0.21	-1.3
2,240,500	+		BT1792	0.21	+1.3
2,240,576	+		BT1792	0.24	-2.2
2,240,576	+		BT1792	0.24	-1.0
2,240,620	+		BT1792	0.25	-2.5
2,240,620	+		BT1792	0.25	-1.9