Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1172

Experiment: BHIS with Lithocholic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Lithocholic 0.4 mg/ml
1,458,791	+				-1.9
1,458,850	-				+0.3
1,458,864	+				-0.7
1,458,885	+				-1.5
1,458,885	+				-0.9
1,458,889	+				-0.3
1,458,893	-				-1.0
1,458,943	-				-1.3
1,459,146	+		BT1171	0.16	+0.3
1,459,181	+		BT1171	0.24	-0.7
1,459,506	-				-1.9
1,459,729	+				-1.0
1,459,730	-				+1.0
1,459,733	-				-0.2
1,459,747	-				-0.7
1,459,768	-				+0.2
1,459,772	-				-0.4
1,459,779	-				-0.7
1,459,979	-		BT1172	0.10	-0.7
1,460,068	+		BT1172	0.15	-1.5
1,460,150	+		BT1172	0.20	+0.3
1,460,198	-		BT1172	0.23	+0.1
1,460,493	+		BT1172	0.39	-2.5
1,460,592	-		BT1172	0.45	-0.7
1,460,600	-		BT1172	0.45	+1.4
1,460,612	+		BT1172	0.46	+0.7
1,460,792	+		BT1172	0.56	+0.9
1,460,792	+		BT1172	0.56	+0.2
1,460,792	+		BT1172	0.56	+0.5
1,461,288	-		BT1172	0.83	+1.3
1,461,603	+				-0.3
1,461,656	-				-3.2
1,461,681	-				+0.2
1,461,681	-				-1.4
1,461,857	+				-0.3
1,461,857	+				-1.8
1,461,945	-				+0.1
1,461,980	+		BT1173	0.13	-2.0
1,462,218	-		BT1173	0.37	+0.9
1,462,518	+		BT1173	0.67	-1.7
1,462,519	-		BT1173	0.67	-1.9