Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3750

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,867,014	-		BT3749	0.24	-0.0
4,867,041	+		BT3749	0.27	-1.4
4,867,044	-		BT3749	0.27	-0.4
4,867,050	-		BT3749	0.27	-0.4
4,867,074	-		BT3749	0.30	-1.6
4,867,088	+		BT3749	0.31	-1.4
4,867,111	-		BT3749	0.34	+1.3
4,867,161	+		BT3749	0.39	+0.6
4,867,226	-		BT3749	0.46	-3.0
4,867,291	-		BT3749	0.52	-2.0
4,867,345	-		BT3749	0.58	-0.0
4,867,347	+		BT3749	0.58	-0.7
4,867,387	-		BT3749	0.62	-1.0
4,867,409	-		BT3749	0.64	-1.2
4,867,413	+		BT3749	0.65	-1.0
4,867,413	+		BT3749	0.65	-0.9
4,867,414	-		BT3749	0.65	-0.4
4,867,441	+		BT3749	0.68	+0.6
4,867,476	+		BT3749	0.71	+0.3
4,867,512	+		BT3749	0.75	-0.7
4,867,512	+		BT3749	0.75	-2.1
4,867,570	+		BT3749	0.81	-2.9
4,867,664	-				+0.6
4,867,664	-				+0.6
4,867,664	-				+0.1
4,867,709	+				-1.1
4,867,710	-				-1.0
4,867,710	-				+0.6
4,867,710	-				-1.8
4,867,757	-				-1.8
4,867,763	-				-0.4
4,867,769	-				-0.8
4,867,843	-				-1.0
4,867,877	-				+0.1
4,867,877	-				-0.1
4,867,896	+				-0.0
4,867,901	-				-1.9
4,868,006	+				-1.8
4,868,019	-				-1.9
4,868,057	-				+1.6
4,868,175	+				-3.0
4,868,175	+				-0.0
4,868,226	+		BT3750	0.11	+0.6
4,868,227	-		BT3750	0.11	+0.5
4,868,227	-		BT3750	0.11	-1.5
4,868,367	+		BT3750	0.17	-0.6
4,868,452	-		BT3750	0.20	-1.9
4,868,466	-		BT3750	0.20	-0.8
4,868,499	-		BT3750	0.22	+0.2
4,868,519	+		BT3750	0.23	-0.0
4,868,525	+		BT3750	0.23	+0.1
4,868,629	+		BT3750	0.27	+0.6
4,868,629	+		BT3750	0.27	+1.6
4,868,630	-		BT3750	0.27	+0.2
4,868,822	+		BT3750	0.34	+1.6
4,868,831	-		BT3750	0.35	+1.0
4,868,831	-		BT3750	0.35	-1.9
4,868,831	-		BT3750	0.35	-1.9
4,868,831	-		BT3750	0.35	+0.6
4,868,832	+		BT3750	0.35	-0.7
4,868,833	-		BT3750	0.35	+1.1
4,868,833	-		BT3750	0.35	+0.4
4,868,833	-		BT3750	0.35	-1.2
4,868,859	+		BT3750	0.36	+0.3
4,868,863	+		BT3750	0.36	-2.2
4,868,864	-		BT3750	0.36	-1.0
4,868,864	-		BT3750	0.36	-1.7
4,868,864	-		BT3750	0.36	-1.6
4,868,919	+		BT3750	0.38	-1.9
4,868,919	+		BT3750	0.38	+1.6
4,869,040	-		BT3750	0.43	-0.5
4,869,042	+		BT3750	0.43	-1.5
4,869,046	-		BT3750	0.43	-0.0
4,869,088	+		BT3750	0.44	-1.0
4,869,089	-		BT3750	0.44	+0.4
4,869,143	-		BT3750	0.47	-2.3
4,869,258	+		BT3750	0.51	-2.0
4,869,258	+		BT3750	0.51	-1.6
4,869,259	-		BT3750	0.51	-1.4
4,869,377	+		BT3750	0.56	+0.6
4,869,397	+		BT3750	0.56	+0.6
4,869,455	+		BT3750	0.59	-0.7
4,869,455	+		BT3750	0.59	+0.3
4,869,456	-		BT3750	0.59	+1.6
4,869,459	+		BT3750	0.59	-0.2
4,869,459	+		BT3750	0.59	+0.7
4,869,502	+		BT3750	0.60	-1.4
4,869,503	-		BT3750	0.60	+1.0
4,869,576	+		BT3750	0.63	-1.0
4,869,590	-		BT3750	0.64	-0.3
4,869,591	+		BT3750	0.64	-2.3
4,869,591	+		BT3750	0.64	+1.0
4,869,591	+		BT3750	0.64	+0.4
4,869,592	-		BT3750	0.64	-1.4
4,869,614	-		BT3750	0.65	+0.2
4,869,660	+		BT3750	0.66	-2.1
4,869,664	+		BT3750	0.67	-1.2
4,869,678	+		BT3750	0.67	-0.4
4,869,683	-		BT3750	0.67	+0.6
4,869,685	-		BT3750	0.67	+0.5
4,869,692	-		BT3750	0.68	-2.1
4,869,734	-		BT3750	0.69	-1.0
4,869,748	-		BT3750	0.70	-1.4
4,869,748	-		BT3750	0.70	+2.2
4,869,767	-		BT3750	0.71	-2.8
4,869,854	-		BT3750	0.74	-1.6
4,870,007	-		BT3750	0.80	+0.3
4,870,067	-		BT3750	0.82	-0.8
4,870,123	-		BT3750	0.84	-3.0
4,870,165	+		BT3750	0.86	-1.0
4,870,166	-		BT3750	0.86	-1.9
4,870,175	+		BT3750	0.86	-0.0
4,870,176	-		BT3750	0.86	-1.8
4,870,176	-		BT3750	0.86	-1.8
4,870,214	-		BT3750	0.88	-1.2
4,870,214	-		BT3750	0.88	-2.0
4,870,214	-		BT3750	0.88	+0.3
4,870,304	+				-1.1
4,870,341	+				-0.8
4,870,352	-				-1.0
4,870,365	+				-0.4
4,870,385	-				+0.2
4,870,415	-				+0.3
4,870,416	+				+1.1
4,870,417	-				-0.3
4,870,475	-				+0.6
4,870,532	-				+0.2
4,870,565	+				+0.3
4,870,566	-				-2.2
4,870,616	-				-0.8
4,870,619	+				+0.5
4,870,628	-				-1.0
4,870,675	-		BT3751	0.12	-2.3
4,870,675	-		BT3751	0.12	-0.7
4,870,677	-		BT3751	0.12	-0.4
4,870,768	-		BT3751	0.26	-1.0
4,870,818	-		BT3751	0.33	-1.5
4,870,820	-		BT3751	0.33	-1.6
4,870,983	-		BT3751	0.58	-1.2
4,871,012	+		BT3751	0.62	-0.8
4,871,065	+		BT3751	0.70	+1.1
4,871,066	-		BT3751	0.70	-0.0
4,871,092	+		BT3751	0.74	+0.5
4,871,214	-				+0.3
4,871,214	-				+0.6
4,871,214	-				-0.6
4,871,216	-				-1.8
4,871,216	-				+0.6
4,871,216	-				+0.6
4,871,252	-				+0.9
4,871,272	-				-0.6
4,871,272	-				-0.4
4,871,276	-				-2.1
4,871,276	-				-1.2
4,871,321	-				-2.7
4,871,325	-				-1.8
4,871,340	-				-1.1
4,871,404	+				+0.5
4,871,428	-				-0.0
4,871,528	+		BT3752	0.16	+1.0