Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3491

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,502,034	-		BT3490	0.63	+0.0
4,502,122	-		BT3490	0.70	-1.6
4,502,138	+		BT3490	0.71	-1.2
4,502,192	-		BT3490	0.75	-0.8
4,502,192	-		BT3490	0.75	+1.0
4,502,192	-		BT3490	0.75	+0.3
4,502,211	+		BT3490	0.76	-2.4
4,502,219	+		BT3490	0.77	-1.0
4,502,219	+		BT3490	0.77	-0.5
4,502,219	+		BT3490	0.77	+0.6
4,502,276	+		BT3490	0.81	-2.0
4,502,277	-		BT3490	0.81	+0.0
4,502,316	+		BT3490	0.84	+0.6
4,502,341	-		BT3490	0.86	-0.8
4,502,668	+				-1.6
4,502,734	-				+1.6
4,502,745	+				+3.6
4,502,754	+				+0.6
4,502,774	-				-1.8
4,502,999	-				-1.0
4,503,040	-		BT3491	0.14	-3.1
4,503,118	+		BT3491	0.29	-1.0
4,503,142	+		BT3491	0.34	-1.7
4,503,171	+		BT3491	0.39	-1.0
4,503,172	-		BT3491	0.40	-2.2
4,503,181	+		BT3491	0.41	-0.7
4,503,186	+		BT3491	0.42	-0.6
4,503,243	+		BT3491	0.53	-1.0
4,503,281	-		BT3491	0.61	-1.2
4,503,348	-		BT3491	0.74	-1.9
4,503,436	-				+0.4
4,503,498	-				-2.1
4,503,511	-				-2.2
4,503,542	-				-1.2
4,503,542	-				+0.0
4,503,606	+				-1.0
4,503,665	+				+0.2
4,503,666	-				-1.2
4,503,691	-				-0.4
4,503,805	-		BT3492	0.12	-2.1
4,503,805	-		BT3492	0.12	+0.6
4,503,806	+		BT3492	0.12	-0.7
4,503,898	-		BT3492	0.18	-1.6
4,503,898	-		BT3492	0.18	-1.8
4,503,926	-		BT3492	0.20	-1.2
4,503,945	-		BT3492	0.22	+0.4
4,503,978	+		BT3492	0.24	-0.4
4,503,979	-		BT3492	0.24	+1.6
4,504,020	-		BT3492	0.27	-2.3
4,504,031	+		BT3492	0.27	+0.8
4,504,032	-		BT3492	0.27	+0.1
4,504,066	-		BT3492	0.30	-1.2
4,504,131	+		BT3492	0.34	+0.0
4,504,132	-		BT3492	0.34	-0.4
4,504,135	+		BT3492	0.34	+0.6
4,504,136	-		BT3492	0.34	-1.5
4,504,228	+		BT3492	0.41	-3.0
4,504,229	-		BT3492	0.41	+0.3
4,504,246	-		BT3492	0.42	-1.1
4,504,267	-		BT3492	0.43	+0.4
4,504,267	-		BT3492	0.43	-0.7
4,504,352	+		BT3492	0.49	-0.6
4,504,353	-		BT3492	0.49	+0.6
4,504,363	-		BT3492	0.50	-0.7
4,504,405	-		BT3492	0.53	+0.6