Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3409

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,390,557	+				-2.0
4,390,561	+				+1.6
4,391,795	+				-0.7
4,391,796	-				-2.3
4,391,805	+				-2.3
4,391,889	-				+0.0
4,391,891	+				-3.7
4,391,891	+				-0.4
4,391,919	+				-1.8
4,391,919	+				-0.9
4,391,922	+				-0.1
4,391,922	+				-2.8
4,391,923	-				+0.0
4,391,948	+				-2.4
4,391,968	-				+0.3
4,391,973	+				-2.2
4,391,987	-				-2.1
4,391,994	-				-1.7
4,392,004	+				-1.9
4,392,006	+				-1.7
4,392,062	+				-0.4
4,392,063	-				-0.9
4,392,079	-				-0.2
4,392,141	+		BT3410	0.13	+0.0
4,392,142	-		BT3410	0.14	-0.3
4,392,211	+		BT3410	0.35	-1.6
4,392,212	-		BT3410	0.35	-1.0
4,392,225	+		BT3410	0.39	+2.0
4,392,226	-		BT3410	0.40	-0.3
4,392,226	-		BT3410	0.40	+0.7
4,392,245	+		BT3410	0.45	-0.3
4,392,246	-		BT3410	0.46	+0.0
4,392,255	+		BT3410	0.48	-2.3
4,392,258	+		BT3410	0.49	-1.0
4,392,258	+		BT3410	0.49	+0.1
4,392,259	-		BT3410	0.50	-0.2
4,392,259	-		BT3410	0.50	-1.1
4,392,259	-		BT3410	0.50	-2.7
4,392,259	-		BT3410	0.50	-2.5
4,392,262	+		BT3410	0.51	+0.9
4,392,263	-		BT3410	0.51	-1.5
4,392,371	-		BT3410	0.84	-1.3
4,392,371	-		BT3410	0.84	-0.7
4,392,373	+		BT3410	0.85	-2.1
4,392,373	+		BT3410	0.85	-1.4
4,392,374	-		BT3410	0.85	-1.2
4,392,374	-		BT3410	0.85	-2.0
4,392,419	+				-1.7
4,392,432	+				+0.4
4,392,437	+				-1.6
4,392,534	+				-0.4
4,392,579	-				-1.8
4,392,587	-				-1.4
4,392,594	+				-1.0
4,392,633	+				-1.2
4,392,649	+				-0.4
4,392,680	+				-0.6
4,392,680	+				-1.0
4,392,744	+				-0.9
4,392,777	+				+0.0
4,392,787	+				-0.6
4,392,788	-				-3.7
4,392,788	-				-2.0
4,392,788	-				+0.1
4,392,788	-				-2.4
4,392,788	-				-0.7