Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3401

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,379,212	-		BT3399	0.65	-1.0
4,379,228	-		BT3399	0.67	+0.8
4,379,274	-		BT3399	0.73	-0.5
4,379,287	-		BT3399	0.75	-1.5
4,379,442	+				-1.5
4,379,455	+				+0.0
4,379,456	-				+0.2
4,379,456	-				-1.5
4,379,456	-				+0.6
4,379,458	-				-4.2
4,379,488	+				+0.0
4,379,500	+				-2.1
4,379,501	-				+0.6
4,379,505	-				-1.5
4,379,595	-		BT3400	0.24	+0.1
4,379,601	+		BT3400	0.26	+0.5
4,379,745	-		BT3400	0.62	-0.1
4,379,745	-		BT3400	0.62	-1.4
4,379,747	-		BT3400	0.63	-0.6
4,379,758	+		BT3400	0.65	-0.5
4,379,794	-		BT3400	0.74	-0.2
4,379,895	-				+0.7
4,379,904	-				-0.8
4,379,930	-				-0.4
4,380,039	-				-2.0
4,380,039	-				-1.7
4,380,039	-				+1.6
4,380,043	+				-1.6
4,380,043	+				+1.6
4,380,043	+				+0.0
4,380,071	+				+0.0
4,380,072	-				-0.5
4,380,091	+				-0.4
4,380,091	+				+0.6
4,380,092	-				-1.2
4,380,092	-				-2.3
4,380,092	-				-0.7
4,380,092	-				-2.7
4,380,092	-				-0.3
4,380,109	+				-2.2
4,380,110	-				-2.4
4,380,110	-				-1.2
4,380,122	-				-2.2
4,380,163	+				-1.8
4,380,163	+				-1.5
4,380,180	+				+0.2
4,380,188	+				+0.1
4,380,192	-				-0.1
4,380,192	-				+0.0
4,380,203	+				+0.4
4,380,215	+				-1.2
4,380,269	+		BT3401	0.11	-1.0
4,380,299	+		BT3401	0.13	+1.6
4,380,305	+		BT3401	0.14	+0.0
4,380,306	-		BT3401	0.14	+1.6
4,380,306	-		BT3401	0.14	-2.5
4,380,306	-		BT3401	0.14	-1.2
4,380,311	-		BT3401	0.14	+0.6
4,380,329	+		BT3401	0.16	+0.6
4,380,387	+		BT3401	0.21	-0.4
4,380,387	+		BT3401	0.21	-2.6
4,380,392	+		BT3401	0.21	+0.6
4,380,431	-		BT3401	0.25	+2.1
4,380,518	+		BT3401	0.32	+1.3
4,380,518	+		BT3401	0.32	+1.6
4,380,611	-		BT3401	0.40	-0.7
4,380,649	-		BT3401	0.44	-0.9
4,380,660	-		BT3401	0.45	+1.6
4,380,664	-		BT3401	0.45	-2.0
4,380,700	-		BT3401	0.48	-1.6
4,380,702	-		BT3401	0.48	+1.2
4,380,771	-		BT3401	0.54	-0.1
4,380,819	-		BT3401	0.59	+0.6
4,380,826	+		BT3401	0.59	+2.2
4,380,858	-		BT3401	0.62	+0.8
4,380,917	+		BT3401	0.67	-1.0
4,380,940	-		BT3401	0.69	-1.0
4,380,958	-		BT3401	0.71	-1.0
4,380,987	+		BT3401	0.73	+0.1
4,381,009	-		BT3401	0.75	-0.0
4,381,066	-		BT3401	0.80	+0.6
4,381,167	-		BT3401	0.89	-2.5
4,381,291	-				-1.8
4,381,291	-				-2.8
4,381,294	+				+0.3
4,381,294	+				-0.7
4,381,295	-				-0.1
4,381,313	+				-0.4
4,381,314	-				-1.7
4,381,315	+				-1.2
4,381,316	-				-2.5
4,381,332	-				+0.0