Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3276

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,185,742	-		BT3275	0.62	+0.2
4,185,786	+		BT3275	0.64	-1.1
4,185,936	+		BT3275	0.69	-0.3
4,185,942	+		BT3275	0.70	-3.1
4,185,942	+		BT3275	0.70	-1.1
4,185,942	+		BT3275	0.70	+0.1
4,185,943	-		BT3275	0.70	-0.7
4,185,943	-		BT3275	0.70	-1.7
4,185,943	-		BT3275	0.70	+0.4
4,185,947	-		BT3275	0.70	-0.6
4,185,975	-		BT3275	0.71	-1.1
4,186,072	+		BT3275	0.75	-0.3
4,186,139	+		BT3275	0.77	-0.5
4,186,181	+		BT3275	0.79	+0.1
4,186,268	-		BT3275	0.82	-1.9
4,186,268	-		BT3275	0.82	-0.9
4,186,404	-		BT3275	0.88	+0.7
4,186,416	+		BT3275	0.88	-1.8
4,186,416	+		BT3275	0.88	-1.3
4,186,417	-		BT3275	0.88	+1.7
4,186,503	-				+0.2
4,186,568	-				-1.8
4,186,603	+				-1.7
4,186,603	+				-1.0
4,186,609	-				+0.1
4,186,632	-				-0.2
4,186,726	-				-1.6
4,186,745	+				-0.5
4,186,748	-				+0.8
4,186,748	-				-1.3
4,186,748	-				-1.1
4,186,750	+				-2.1
4,186,750	+				-1.5
4,186,750	+				-0.3
4,186,751	-				-0.3
4,186,756	-				-1.7
4,186,764	+				-0.3
4,186,819	+				-3.8
4,186,840	+				-1.3
4,186,840	+				+0.1
4,186,840	+				-0.7
4,186,840	+				-2.1
4,186,841	-				-1.8
4,186,997	+		BT3276	0.10	-1.1
4,187,052	+		BT3276	0.12	-0.3
4,187,053	-		BT3276	0.12	+0.1
4,187,080	+		BT3276	0.13	+0.2
4,187,095	+		BT3276	0.14	+0.9
4,187,110	+		BT3276	0.14	-1.9
4,187,110	+		BT3276	0.14	-1.7
4,187,123	-		BT3276	0.15	-3.3
4,187,123	-		BT3276	0.15	-1.1
4,187,140	+		BT3276	0.16	+0.7
4,187,197	-		BT3276	0.18	-1.8
4,187,216	-		BT3276	0.19	+0.1
4,187,232	+		BT3276	0.19	-2.4
4,187,233	-		BT3276	0.19	+0.1
4,187,304	-		BT3276	0.22	+1.7
4,187,353	+		BT3276	0.24	-0.1
4,187,384	-		BT3276	0.25	-1.0
4,187,384	-		BT3276	0.25	-0.2
4,187,385	+		BT3276	0.25	-3.3
4,187,386	-		BT3276	0.25	-0.3
4,187,408	+		BT3276	0.26	-0.3
4,187,409	-		BT3276	0.26	+0.7
4,187,409	-		BT3276	0.26	-3.7
4,187,410	+		BT3276	0.26	+0.1
4,187,410	+		BT3276	0.26	-0.9
4,187,411	-		BT3276	0.26	-0.6
4,187,439	-		BT3276	0.27	+0.7
4,187,443	+		BT3276	0.27	-0.7
4,187,448	-		BT3276	0.27	-1.1
4,187,598	+		BT3276	0.33	-0.5
4,187,598	+		BT3276	0.33	-2.1
4,187,599	-		BT3276	0.33	-0.8
4,187,599	-		BT3276	0.33	-1.1
4,187,690	+		BT3276	0.37	+0.2
4,187,690	+		BT3276	0.37	-1.7
4,187,690	+		BT3276	0.37	-0.9
4,187,690	+		BT3276	0.37	-2.5
4,187,691	-		BT3276	0.37	-0.1
4,187,726	+		BT3276	0.38	-1.5
4,187,789	-		BT3276	0.41	-2.4
4,187,849	-		BT3276	0.43	-1.0
4,187,856	+		BT3276	0.43	-1.5
4,187,856	+		BT3276	0.43	-1.3
4,187,857	-		BT3276	0.43	-1.7
4,187,898	+		BT3276	0.45	-2.3
4,187,909	-		BT3276	0.45	-4.1
4,187,925	+		BT3276	0.46	-1.1
4,187,956	+		BT3276	0.47	-0.7
4,188,020	-		BT3276	0.49	-1.3
4,188,020	-		BT3276	0.49	-0.5
4,188,020	-		BT3276	0.49	-1.5
4,188,023	-		BT3276	0.49	-2.5
4,188,023	-		BT3276	0.49	-0.1
4,188,160	+		BT3276	0.55	-0.8
4,188,171	-		BT3276	0.55	-1.7
4,188,296	+		BT3276	0.60	+0.7
4,188,310	+		BT3276	0.60	-0.3
4,188,311	-		BT3276	0.61	-0.4
4,188,311	-		BT3276	0.61	-2.1
4,188,314	+		BT3276	0.61	+0.0
4,188,315	-		BT3276	0.61	+0.7
4,188,371	-		BT3276	0.63	-1.9
4,188,386	+		BT3276	0.63	-1.9
4,188,387	-		BT3276	0.63	-0.7
4,188,387	-		BT3276	0.63	-0.2
4,188,392	+		BT3276	0.64	-0.6
4,188,392	+		BT3276	0.64	+0.2
4,188,392	+		BT3276	0.64	-0.7
4,188,393	-		BT3276	0.64	-0.3
4,188,394	+		BT3276	0.64	+0.2
4,188,394	+		BT3276	0.64	-1.3
4,188,396	+		BT3276	0.64	-2.3
4,188,396	+		BT3276	0.64	+0.1
4,188,400	+		BT3276	0.64	-0.7
4,188,478	+		BT3276	0.67	-0.2
4,188,479	-		BT3276	0.67	-1.1
4,188,487	+		BT3276	0.67	-2.8
4,188,512	+		BT3276	0.68	-2.8
4,188,513	-		BT3276	0.68	-0.5
4,188,517	+		BT3276	0.68	+1.1
4,188,565	-		BT3276	0.70	-2.4
4,188,577	+		BT3276	0.71	-0.6
4,188,598	+		BT3276	0.72	-0.3
4,188,609	+		BT3276	0.72	-0.2
4,188,618	-		BT3276	0.72	-0.8
4,188,633	-		BT3276	0.73	-0.9
4,188,643	+		BT3276	0.73	-1.4
4,188,671	+		BT3276	0.74	+0.1
4,188,787	+		BT3276	0.79	-1.9
4,188,827	-		BT3276	0.80	-1.1
4,188,884	+		BT3276	0.83	-2.1
4,188,887	-		BT3276	0.83	+2.0
4,188,910	+		BT3276	0.84	-0.3
4,188,911	-		BT3276	0.84	-1.3
4,188,911	-		BT3276	0.84	+0.1
4,188,915	-		BT3276	0.84	+0.7
4,188,976	-		BT3276	0.86	+1.7
4,189,000	+		BT3276	0.87	-1.5
4,189,033	+		BT3276	0.88	-0.7
4,189,120	+				-1.8
4,189,184	+				-1.1
4,189,212	-				-5.0
4,189,215	-				-0.7
4,189,293	-				-1.1
4,189,319	-				-0.3
4,189,353	-				+0.3
4,189,364	+				-1.8
4,189,395	+				+0.7
4,189,396	-				-1.1
4,189,396	-				-0.3
4,189,453	-				+0.7
4,189,509	+				-1.4
4,189,669	-		BT3277	0.12	-1.4
4,189,680	+		BT3277	0.14	-3.2
4,189,705	+		BT3277	0.18	-2.5
4,189,706	-		BT3277	0.18	-2.1
4,189,740	-		BT3277	0.24	-3.5
4,189,813	-		BT3277	0.37	+0.2
4,189,813	-		BT3277	0.37	-1.8
4,189,819	-		BT3277	0.38	+0.7
4,189,820	+		BT3277	0.38	+0.7
4,189,849	-		BT3277	0.43	-3.4
4,189,860	-		BT3277	0.45	-0.7
4,189,879	-		BT3277	0.49	+0.1
4,189,879	-		BT3277	0.49	-1.3
4,189,917	-		BT3277	0.55	-0.7
4,190,003	+		BT3277	0.70	+0.9
4,190,022	+		BT3277	0.74	+0.7
4,190,024	+		BT3277	0.74	+2.8
4,190,025	-		BT3277	0.74	+0.3
4,190,136	+				-1.3
4,190,136	+				-0.9
4,190,149	+				-1.9
4,190,181	+				+0.4
4,190,182	-				-1.9