Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3259

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
4,160,355	+				+0.1
4,160,356	-				+0.4
4,160,378	+				-0.9
4,160,378	+				-3.3
4,160,434	+				-2.7
4,160,434	+				-1.3
4,160,438	+				-1.5
4,160,670	-		BT_3258	0.27	+0.4
4,160,670	-		BT_3258	0.27	-2.3
4,160,670	-		BT_3258	0.27	-0.2
4,160,726	+		BT_3258	0.34	-0.7
4,160,738	+		BT_3258	0.35	-1.7
4,160,738	+		BT_3258	0.35	-0.6
4,160,742	+		BT_3258	0.36	-2.1
4,160,842	+		BT_3258	0.49	-0.7
4,160,843	-		BT_3258	0.49	-2.1
4,160,918	+		BT_3258	0.58	+0.5
4,160,918	+		BT_3258	0.58	-2.5
4,160,919	-		BT_3258	0.58	-1.0
4,161,007	+		BT_3258	0.70	-2.2
4,161,007	+		BT_3258	0.70	-0.7
4,161,008	-		BT_3258	0.70	-3.5
4,161,047	+		BT_3258	0.75	-1.3
4,161,086	+		BT_3258	0.80	-3.5
4,161,176	+				+0.9
4,161,254	+				-1.7
4,161,254	+				-0.2
4,161,259	+				-2.0
4,161,259	+				-2.2
4,161,308	+				+1.0
4,161,309	-				+0.4
4,161,309	-				-0.7
4,161,329	+				-0.9
4,161,329	+				+0.2
4,161,352	-				-1.6
4,161,359	-				-1.1
4,161,361	+				+0.4
4,161,400	-		BT3259	0.13	-0.7
4,161,425	-		BT3259	0.19	+0.1
4,161,456	+		BT3259	0.27	+0.1
4,161,460	+		BT3259	0.28	+1.6
4,161,461	-		BT3259	0.28	+0.4
4,161,461	-		BT3259	0.28	+0.1
4,161,550	-		BT3259	0.51	-0.9
4,161,553	+		BT3259	0.51	-0.2
4,161,555	+		BT3259	0.52	+1.9
4,161,561	+		BT3259	0.53	-0.0
4,161,568	+		BT3259	0.55	-0.9
4,161,584	-		BT3259	0.59	+0.5
4,161,584	-		BT3259	0.59	-1.8
4,161,584	-		BT3259	0.59	-0.6
4,161,614	+		BT3259	0.67	-2.2
4,161,643	+		BT3259	0.74	+0.9
4,161,643	+		BT3259	0.74	-2.3
4,161,645	+				+1.7
4,161,663	+		BT3259	0.79	-2.7
4,161,664	-		BT3259	0.79	-1.5
4,161,704	+		BT3259	0.89	+0.9
4,161,711	-				-1.6
4,161,759	+				-1.8
4,161,795	+				+0.9
4,161,795	+				+0.3
4,161,796	-				-2.4
4,161,831	-				-1.0
4,161,847	-				-2.3
4,162,044	+				-1.1
4,162,067	+				-0.7
4,162,075	-				-1.3
4,162,080	-				+0.7
4,162,178	-				-3.0
4,162,178	-				-3.9
4,162,226	-				-1.0
4,162,250	-				-1.1