Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3110

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
3,955,938	+		BT3109	0.61	-0.9
3,955,939	-		BT3109	0.61	-0.7
3,955,984	-		BT3109	0.64	-2.3
3,956,024	-		BT3109	0.67	-2.0
3,956,073	-		BT3109	0.70	-0.9
3,956,174	+		BT3109	0.77	-0.1
3,956,174	+		BT3109	0.77	-2.6
3,956,174	+		BT3109	0.77	-1.9
3,956,207	+				+1.7
3,956,207	+		BT3109	0.79	-0.0
3,956,208	-		BT3109	0.79	-0.6
3,956,208	-		BT3109	0.79	-2.7
3,956,226	+		BT3109	0.80	+0.3
3,956,277	-		BT3109	0.83	-1.9
3,956,316	+		BT3109	0.86	-0.6
3,956,325	+		BT3109	0.87	-1.8
3,956,325	+		BT3109	0.87	-0.1
3,956,326	-		BT3109	0.87	-0.3
3,956,326	-		BT3109	0.87	+0.7
3,956,330	+		BT3109	0.87	-2.2
3,956,530	-				-2.2
3,956,530	-				-2.0
3,956,533	-				-0.3
3,956,535	+				-2.8
3,956,536	-				+0.1
3,956,537	+				-0.3
3,956,538	-				-0.4
3,956,539	+				+0.2
3,956,544	+				-1.5
3,956,591	-				-0.2
3,956,622	+				-2.1
3,956,622	+				-1.1
3,956,626	+				+1.4
3,956,627	-				-1.1
3,956,642	+				-0.7
3,956,642	+				-0.3
3,956,645	+				+1.0
3,956,647	+				+0.4
3,956,690	+				-0.5
3,956,706	+				-0.6
3,956,706	+				+0.8
3,956,708	+				+0.5
3,956,709	-				-0.9
3,956,821	+				-2.1
3,956,856	-				-1.5
3,956,862	-				-0.3
3,956,890	-				-1.5
3,956,910	-				+0.8
3,956,914	+				+0.4
3,956,914	+				+0.1
3,956,932	-				+0.6
3,956,938	-				+0.1
3,956,947	-				+0.1
3,956,975	-				+0.2
3,956,980	+				-1.6
3,956,995	+				-0.6
3,956,999	+				+1.7
3,957,053	-		BT3110	0.13	+0.1
3,957,053	-		BT3110	0.13	-0.4
3,957,073	-		BT3110	0.15	-0.7
3,957,074	+		BT3110	0.15	-1.9
3,957,075	-		BT3110	0.16	-3.0
3,957,075	-		BT3110	0.16	+0.7
3,957,093	+		BT3110	0.17	-2.6
3,957,100	+		BT3110	0.18	+0.1
3,957,101	-		BT3110	0.18	-2.0
3,957,171	+		BT3110	0.25	-2.0
3,957,171	+		BT3110	0.25	-0.3
3,957,171	+		BT3110	0.25	-0.9
3,957,229	-		BT3110	0.31	-0.9
3,957,266	-		BT3110	0.34	+0.5
3,957,266	-		BT3110	0.34	-1.0
3,957,306	-		BT3110	0.38	-1.9
3,957,347	+		BT3110	0.42	-1.1
3,957,396	+		BT3110	0.47	-3.4
3,957,396	+		BT3110	0.47	-1.0
3,957,480	-		BT3110	0.55	-1.6
3,957,480	-		BT3110	0.55	-0.5
3,957,525	+		BT3110	0.59	+0.3
3,957,525	+		BT3110	0.59	-3.0
3,957,548	+		BT3110	0.62	+0.1
3,957,549	-		BT3110	0.62	+0.1
3,957,603	-		BT3110	0.67	-0.9
3,957,603	-		BT3110	0.67	-0.3
3,957,603	-		BT3110	0.67	-1.8
3,957,615	+		BT3110	0.68	-0.3
3,957,695	-		BT3110	0.76	-0.7
3,957,695	-		BT3110	0.76	-1.5
3,957,717	-		BT3110	0.78	-2.9
3,957,750	+		BT3110	0.81	-0.3
3,957,838	-				+0.0
3,957,897	-				-0.1
3,957,913	-				-1.6
3,957,975	-				-0.3
3,957,998	-				+1.7
3,958,025	-				-0.5
3,958,025	-				-1.3
3,958,030	+				-0.6
3,958,030	+				-1.5
3,958,042	+				-1.3
3,958,043	-				-1.4
3,958,045	-				-0.6
3,958,109	-				-1.5
3,958,285	+		BT3111	0.15	+0.9
3,958,333	+		BT3111	0.17	-0.6
3,958,334	-		BT3111	0.17	+0.0
3,958,342	+		BT3111	0.17	-1.1
3,958,364	-		BT3111	0.18	-0.6
3,958,373	+		BT3111	0.18	-0.9
3,958,480	+		BT3111	0.23	+1.7
3,958,501	+		BT3111	0.24	-2.0
3,958,534	-		BT3111	0.25	-1.8
3,958,567	+		BT3111	0.26	+0.7
3,958,567	+		BT3111	0.26	-3.5
3,958,567	+		BT3111	0.26	-2.4
3,958,568	-		BT3111	0.26	+0.0
3,958,568	-		BT3111	0.26	-1.1
3,958,570	-		BT3111	0.27	+0.1
3,958,574	+		BT3111	0.27	+0.7
3,958,575	-		BT3111	0.27	-0.4
3,958,603	+		BT3111	0.28	-0.9
3,958,603	+		BT3111	0.28	+0.6
3,958,604	-		BT3111	0.28	+1.1
3,958,604	-		BT3111	0.28	-0.6
3,958,613	-		BT3111	0.28	-1.8
3,958,653	-		BT3111	0.30	-0.9
3,958,783	-		BT3111	0.36	+0.8
3,958,826	-		BT3111	0.37	-1.5
3,958,827	+		BT3111	0.37	-0.3
3,958,827	+		BT3111	0.37	-0.0
3,958,827	+		BT3111	0.37	-0.5
3,958,828	-		BT3111	0.37	-1.1
3,958,828	-		BT3111	0.37	-2.4
3,958,830	+		BT3111	0.37	+0.4
3,958,830	+		BT3111	0.37	-1.7
3,958,830	+		BT3111	0.37	+0.5
3,958,831	-		BT3111	0.38	-0.8
3,958,893	+		BT3111	0.40	-0.6
3,958,894	-		BT3111	0.40	-0.6
3,958,918	-		BT3111	0.41	-0.9