Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2615

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
3,253,922	-		BT2614	0.64	-1.4
3,253,963	-		BT2614	0.66	-0.8
3,254,025	+		BT2614	0.69	+0.6
3,254,027	+		BT2614	0.69	-1.2
3,254,069	-		BT2614	0.71	-0.7
3,254,076	+		BT2614	0.71	-2.4
3,254,076	+				+1.6
3,254,167	+		BT2614	0.76	-1.7
3,254,382	+		BT2614	0.86	-1.3
3,254,383	-		BT2614	0.86	-2.7
3,254,415	+		BT2614	0.88	+0.1
3,254,416	-		BT2614	0.88	-0.8
3,254,529	-				-0.4
3,254,664	-				-3.1
3,254,724	-				-3.1
3,254,724	-				-0.7
3,254,827	-				-0.4
3,254,827	-				-3.1
3,254,827	-				-0.2
3,254,830	+				-0.4
3,254,835	-				-0.9
3,254,835	-				-1.4
3,254,874	-				-2.5
3,254,906	-				-0.4
3,254,912	+				-1.8
3,254,912	+				-0.8
3,254,912	+				-0.3
3,254,913	-				+1.4
3,254,972	+		BT2615	0.11	-0.7
3,254,972	+		BT2615	0.11	+0.8
3,254,973	-		BT2615	0.11	+0.6
3,255,029	+		BT2615	0.15	-1.4
3,255,029	+		BT2615	0.15	+0.0
3,255,064	+		BT2615	0.18	-0.2
3,255,064	+		BT2615	0.18	-2.3
3,255,065	-		BT2615	0.18	-1.5
3,255,085	-		BT2615	0.20	-1.7
3,255,090	-		BT2615	0.20	-1.5
3,255,096	+		BT2615	0.21	+1.6
3,255,096	+		BT2615	0.21	+0.6
3,255,141	+		BT2615	0.24	-2.6
3,255,142	-		BT2615	0.24	-0.4
3,255,226	+		BT2615	0.31	+0.1
3,255,226	+		BT2615	0.31	-0.1
3,255,230	+		BT2615	0.31	-0.7
3,255,230	+		BT2615	0.31	-2.1
3,255,230	+		BT2615	0.31	-0.7
3,255,231	-		BT2615	0.31	+0.7
3,255,231	-		BT2615	0.31	-0.7
3,255,231	-		BT2615	0.31	+0.6
3,255,231	-		BT2615	0.31	+0.2
3,255,290	-		BT2615	0.36	-1.6
3,255,320	-		BT2615	0.38	-1.8
3,255,392	+		BT2615	0.44	-0.1
3,255,393	-		BT2615	0.44	-1.8
3,255,394	+		BT2615	0.44	-0.9
3,255,408	-		BT2615	0.45	-0.5
3,255,442	+		BT2615	0.47	-0.2
3,255,443	-		BT2615	0.47	-3.6
3,255,443	-		BT2615	0.47	-0.3
3,255,496	+		BT2615	0.52	+0.6
3,255,497	-		BT2615	0.52	-3.6
3,255,528	+				+2.6
3,255,529	-		BT2615	0.54	-2.7
3,255,612	+		BT2615	0.61	-3.5
3,255,612	+		BT2615	0.61	-0.9
3,255,612	+		BT2615	0.61	-1.8
3,255,616	+		BT2615	0.61	-0.1
3,255,616	+		BT2615	0.61	-2.4
3,255,617	-		BT2615	0.61	-1.0
3,255,667	-		BT2615	0.65	+0.1
3,255,667	-		BT2615	0.65	-1.4
3,255,679	-		BT2615	0.66	-1.3
3,255,679	-		BT2615	0.66	-2.5
3,255,791	-		BT2615	0.74	-1.4
3,255,818	+		BT2615	0.76	-1.5
3,255,840	+		BT2615	0.78	-0.4
3,255,894	-		BT2615	0.82	-2.3
3,255,975	-		BT2615	0.89	-1.1
3,256,095	+				-1.2
3,256,127	+				-1.4
3,256,144	+				-0.8
3,256,203	+				-0.7
3,256,204	-				-0.2
3,256,208	+				-0.7
3,256,211	+				-1.2
3,256,233	-				+0.5
3,256,234	+				-3.7
3,256,235	-				-2.5
3,256,293	+				+0.1
3,256,295	+				-2.1
3,256,295	+				-1.5
3,256,317	+				-1.0
3,256,317	+				-2.1
3,256,318	-				-0.9
3,256,371	-				+0.1
3,256,371	-				-0.6
3,256,431	+				-1.8
3,256,431	+				-1.8
3,256,432	-				+0.1
3,256,480	-		BT2616	0.13	-3.2
3,256,483	-		BT2616	0.14	+0.1
3,256,483	-		BT2616	0.14	-0.4
3,256,487	+		BT2616	0.15	-1.7
3,256,488	-		BT2616	0.16	-1.9
3,256,518	+		BT2616	0.26	+0.3
3,256,555	+		BT2616	0.40	-0.4
3,256,555	+		BT2616	0.40	-1.7
3,256,601	-		BT2616	0.57	+0.8
3,256,674	-		BT2616	0.83	-2.1
3,256,697	+				-0.7
3,256,739	+				+0.6
3,256,740	-				+0.6
3,256,781	-				+1.1
3,256,784	-				-2.0
3,256,784	-				-2.0
3,256,835	+				-2.7
3,256,835	+				-0.9
3,256,836	-				-0.5
3,256,877	-		BT2617	0.13	-0.2
3,256,912	-		BT2617	0.15	-0.0
3,256,924	-		BT2617	0.16	+0.3
3,256,953	+		BT2617	0.18	+0.2
3,256,985	+		BT2617	0.21	-2.1
3,256,986	-		BT2617	0.21	-2.4
3,257,006	+		BT2617	0.22	-0.8
3,257,006	+		BT2617	0.22	+0.1
3,257,107	+		BT2617	0.29	-1.1
3,257,108	-		BT2617	0.29	-0.9
3,257,113	+		BT2617	0.30	-0.7