Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2566

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
3,202,910	+		BT2564	0.76	-0.2
3,202,911	-		BT2564	0.76	-1.8
3,202,928	-		BT2564	0.78	-0.2
3,202,928	-		BT2564	0.78	-0.2
3,202,929	+		BT2564	0.78	-1.2
3,202,931	+		BT2564	0.78	-1.8
3,202,932	-		BT2564	0.78	+0.0
3,202,938	+		BT2564	0.79	-1.0
3,203,032	+		BT2564	0.87	-0.4
3,203,033	-		BT2564	0.87	-1.1
3,203,066	-		BT2564	0.90	+0.6
3,203,072	-				-1.0
3,203,073	+				-2.8
3,203,074	-				-0.7
3,203,074	-				-0.3
3,203,075	+				-1.2
3,203,075	+				+0.0
3,203,076	-				-2.2
3,203,076	-				-1.8
3,203,181	+				-2.0
3,203,220	-				+0.5
3,203,223	+				+1.6
3,203,247	+				+0.6
3,203,330	+				+0.0
3,203,330	+				-2.1
3,203,330	+				-2.2
3,203,818	+				+1.6
3,203,818	+				-2.8
3,203,867	-				-1.9
3,203,870	+				+1.2
3,203,891	+				-1.8
3,203,892	-				-1.5
3,203,899	-				+1.6
3,203,899	-				-0.3
3,203,927	-		BT2566	0.12	-2.2
3,203,991	+		BT2566	0.28	-2.5
3,203,992	-		BT2566	0.28	-1.1
3,203,992	-		BT2566	0.28	-1.0
3,203,992	-		BT2566	0.28	-0.5
3,204,022	+		BT2566	0.36	-2.3
3,204,080	+		BT2566	0.51	-1.6
3,204,080	+		BT2566	0.51	-1.5
3,204,175	-		BT2566	0.75	-1.4
3,204,192	+		BT2566	0.79	-1.4
3,204,193	-		BT2566	0.79	-1.0
3,204,271	+				+0.3
3,204,289	+				-0.7
3,204,290	-				-2.8
3,204,290	-				-0.4
3,204,336	+				-4.3
3,204,337	-				-0.2
3,204,337	-				+0.3
3,204,341	+				+0.6
3,204,343	+				-1.0
3,204,343	+				-2.1
3,204,344	-				+0.3
3,204,352	-				+0.3
3,204,451	+		BT2567	0.11	-3.0
3,204,541	-		BT2567	0.21	-0.3
3,204,565	+		BT2567	0.23	-3.1
3,204,565	+		BT2567	0.23	-2.7
3,204,565	+		BT2567	0.23	+0.6
3,204,565	+		BT2567	0.23	-1.4
3,204,567	+		BT2567	0.24	-0.8
3,204,568	-		BT2567	0.24	-3.0
3,204,587	+		BT2567	0.26	-2.1
3,204,588	-		BT2567	0.26	-0.7
3,204,588	-		BT2567	0.26	+0.4
3,204,634	+		BT2567	0.31	+0.3
3,204,634	+		BT2567	0.31	-0.4
3,204,664	+		BT2567	0.34	-1.4
3,204,676	+		BT2567	0.35	+0.0
3,204,677	-		BT2567	0.36	-2.3
3,204,679	+		BT2567	0.36	+3.2
3,204,707	-		BT2567	0.39	-1.0
3,204,707	-		BT2567	0.39	-0.2
3,204,719	-		BT2567	0.40	+0.3
3,204,719	-		BT2567	0.40	-2.0
3,204,745	+		BT2567	0.43	-0.6
3,204,746	-		BT2567	0.43	-0.4
3,204,765	+		BT2567	0.45	-0.0
3,204,766	-		BT2567	0.45	-1.4
3,204,766	-		BT2567	0.45	-0.4
3,204,952	+		BT2567	0.65	-1.4
3,204,971	+		BT2567	0.67	-1.0
3,204,984	-		BT2567	0.69	+0.0
3,205,024	+		BT2567	0.73	-2.6
3,205,024	+		BT2567	0.73	-2.1
3,205,025	-		BT2567	0.73	-1.4
3,205,188	+				+0.2
3,205,188	+				+0.6
3,205,238	-				-2.3
3,205,261	+				-1.2