Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2453

Experiment: BHIS with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Deoxycholic 0.2 mg/ml
3,069,697	-		BT2451	0.57	-1.9
3,069,697	-		BT2451	0.57	-1.0
3,069,698	+		BT2451	0.57	+0.6
3,069,699	-		BT2451	0.57	-1.7
3,069,699	-		BT2451	0.57	-3.1
3,069,699	-		BT2451	0.57	+0.0
3,069,848	+		BT2451	0.69	+1.0
3,069,891	-				-1.0
3,069,892	+		BT2451	0.72	-1.9
3,069,892	+		BT2451	0.72	-0.1
3,069,900	-		BT2451	0.73	-3.0
3,069,903	-		BT2451	0.73	-1.1
3,069,925	+		BT2451	0.75	-1.2
3,069,926	-		BT2451	0.75	-0.7
3,069,962	+		BT2451	0.78	+0.1
3,069,962	+		BT2451	0.78	-2.9
3,070,034	+		BT2451	0.83	-0.0
3,070,084	-		BT2451	0.87	-1.1
3,070,094	-		BT2451	0.88	-1.3
3,070,118	+		BT2451	0.90	-1.2
3,070,118	+		BT2451	0.90	-2.9
3,070,125	+				+0.0
3,070,129	-				-0.4
3,070,163	+				-1.1
3,070,196	+				-0.7
3,070,207	-				-1.2
3,070,229	+				-0.2
3,070,229	+				-1.6
3,070,230	-				+0.0
3,070,237	+				+0.4
3,070,245	+				-2.6
3,070,269	-				-4.2
3,070,293	+		BT2452	0.10	-2.6
3,070,342	+		BT2452	0.22	+0.3
3,070,342	+		BT2452	0.22	+0.2
3,070,347	+		BT2452	0.24	-1.9
3,070,348	-		BT2452	0.24	-1.8
3,070,402	-		BT2452	0.38	-0.6
3,070,447	+		BT2452	0.49	-0.7
3,070,459	-		BT2452	0.52	-0.4
3,070,460	+		BT2452	0.52	+0.5
3,070,461	-		BT2452	0.53	+0.1
3,070,462	+		BT2452	0.53	+0.9
3,070,462	+		BT2452	0.53	-0.6
3,070,463	-		BT2452	0.53	-0.9
3,070,463	-		BT2452	0.53	-0.7
3,070,508	+		BT2452	0.64	+1.6
3,070,508	+		BT2452	0.64	-0.5
3,070,582	+		BT2452	0.83	-3.0
3,070,582	+		BT2452	0.83	+1.6
3,070,592	-		BT2452	0.86	+0.2
3,070,592	-		BT2452	0.86	+0.6
3,070,592	-		BT2452	0.86	-0.2
3,070,594	-		BT2452	0.86	+0.3
3,070,611	-				-1.6
3,070,612	+				-2.4
3,070,613	-				-1.0
3,070,613	-				-2.0
3,070,616	-				-1.7
3,070,621	+				+0.2
3,070,622	-				-1.1
3,070,622	-				-2.6
3,070,624	+				-0.6
3,070,624	+				-3.4
3,070,627	-				-0.7
3,070,630	-				-0.6
3,070,698	+		BT2453	0.20	+0.9
3,070,698	+		BT2453	0.20	-1.1
3,070,705	-		BT2453	0.23	-0.4
3,070,736	+		BT2453	0.38	+0.3
3,070,736	+		BT2453	0.38	+1.0
3,070,773	+		BT2453	0.56	-2.0
3,070,776	-		BT2453	0.57	+0.2
3,070,860	-				+0.0
3,070,883	+				-2.6
3,070,884	-				-0.3
3,070,914	+				-1.2
3,070,914	+				+0.6
3,070,914	+				-1.6
3,070,914	+				-1.3
3,070,915	-				-1.4
3,070,915	-				-1.2
3,070,915	-				-1.4
3,070,915	-				-2.7
3,070,915	-				-1.0
3,070,919	-				-0.6
3,070,919	-				+0.3
3,070,925	-				-1.7
3,070,993	+				-2.3
3,070,993	+				-0.4
3,070,993	+				-1.7
3,070,999	-				-1.4
3,071,009	+				-1.4
3,071,010	-				-3.0
3,071,016	+				-2.1
3,071,017	-				+0.5
3,071,024	+				-0.7
3,071,024	+				+0.0
3,071,025	-		BT2454	0.10	-0.7
3,071,072	+		BT2454	0.28	-2.2
3,071,073	-		BT2454	0.29	-1.0
3,071,125	-		BT2454	0.49	-1.2
3,071,138	-		BT2454	0.54	+0.7
3,071,141	+		BT2454	0.55	-0.9
3,071,141	+		BT2454	0.55	-2.4
3,071,156	+		BT2454	0.61	-0.2
3,071,193	+		BT2454	0.75	-2.2
3,071,194	-		BT2454	0.76	-2.6
3,071,194	-		BT2454	0.76	-1.0
3,071,228	-		BT2454	0.89	-1.6
3,071,229	+		BT2454	0.89	-0.7
3,071,230	-		BT2454	0.90	-1.0
3,071,230	-		BT2454	0.90	-1.2
3,071,234	-				-1.0
3,071,244	-				-0.1
3,071,255	-				+0.0
3,071,319	+				+1.0
3,071,343	+				-0.7
3,071,364	+				-1.6
3,071,364	+				-1.0
3,071,364	+				-1.3
3,071,434	-		BT2455	0.11	-1.6
3,071,434	-		BT2455	0.11	-1.7
3,071,439	+		BT2455	0.12	+0.5
3,071,439	+		BT2455	0.12	-1.0
3,071,439	+		BT2455	0.12	-2.4
3,071,439	+		BT2455	0.12	-1.2
3,071,456	+		BT2455	0.14	+0.0
3,071,513	-		BT2455	0.23	+0.1
3,071,539	+		BT2455	0.27	-0.6
3,071,540	-		BT2455	0.27	-2.1
3,071,548	-		BT2455	0.28	+0.6
3,071,548	-		BT2455	0.28	-0.7
3,071,571	+		BT2455	0.31	-2.5
3,071,574	+		BT2455	0.32	-1.7
3,071,574	+		BT2455	0.32	-1.4
3,071,574	+		BT2455	0.32	-1.4
3,071,583	+		BT2455	0.33	-0.9
3,071,592	+		BT2455	0.34	-1.3
3,071,599	-		BT2455	0.35	-2.9
3,071,599	-		BT2455	0.35	+2.2
3,071,678	-		BT2455	0.47	+0.5
3,071,690	-		BT2455	0.48	-1.0
3,071,690	-		BT2455	0.48	+0.0
3,071,722	+		BT2455	0.53	-1.2
3,071,722	+		BT2455	0.53	+0.0
3,071,746	+		BT2455	0.57	-2.0
3,071,838	+		BT2455	0.70	-0.5
3,071,839	-		BT2455	0.70	-1.2
3,071,858	+		BT2455	0.73	-1.7
3,071,858	+		BT2455	0.73	+0.0