Experiment: BHIS with Deoxycholic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0433 and BT0434 are separated by 339 nucleotides BT0434 and BT0435 are separated by 38 nucleotides
BT0433: BT0433 - putative xylose repressor (NCBI ptt file), at 520,419 to 521,627
BT0433
BT0434: BT0434 - conserved hypothetical protein (NCBI ptt file), at 521,967 to 523,850
BT0434
BT0435: BT0435 - hypothetical protein (NCBI ptt file), at 523,889 to 524,989
BT0435
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 521.181 kb on - strand, within BT0433 at 522.048 kb on - strand at 522.053 kb on - strand at 522.062 kb on + strand at 522.065 kb on + strand at 522.290 kb on - strand, within BT0434 at 522.522 kb on + strand, within BT0434 at 522.587 kb on + strand, within BT0434 at 522.603 kb on - strand, within BT0434 at 522.620 kb on - strand, within BT0434 at 522.644 kb on + strand, within BT0434 at 522.756 kb on - strand, within BT0434 at 522.927 kb on - strand, within BT0434 at 522.930 kb on - strand, within BT0434 at 522.992 kb on + strand, within BT0434 at 522.993 kb on - strand, within BT0434 at 523.029 kb on - strand, within BT0434 at 523.056 kb on - strand, within BT0434 at 523.080 kb on - strand, within BT0434 at 523.196 kb on + strand, within BT0434 at 523.295 kb on - strand, within BT0434 at 523.358 kb on - strand, within BT0434 at 523.695 kb on - strand at 523.796 kb on - strand at 523.859 kb on - strand at 523.898 kb on - strand at 524.252 kb on - strand, within BT0435 at 524.280 kb on - strand, within BT0435 at 524.316 kb on - strand, within BT0435 at 524.362 kb on - strand, within BT0435 at 524.486 kb on - strand, within BT0435
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Deoxycholic 0.2 mg/ml remove 521,181 - BT0433 0.63 -0.1 522,048 - +1.0 522,053 - -0.1 522,062 + +0.5 522,065 + -2.9 522,290 - BT0434 0.17 -1.7 522,522 + BT0434 0.29 +0.5 522,587 + BT0434 0.33 +0.5 522,603 - BT0434 0.34 -1.5 522,620 - BT0434 0.35 -0.8 522,644 + BT0434 0.36 +0.2 522,756 - BT0434 0.42 -0.1 522,927 - BT0434 0.51 -1.9 522,930 - BT0434 0.51 -0.5 522,992 + BT0434 0.54 -2.4 522,993 - BT0434 0.54 -1.3 523,029 - BT0434 0.56 -1.7 523,056 - BT0434 0.58 -0.5 523,080 - BT0434 0.59 -0.1 523,196 + BT0434 0.65 -1.5 523,295 - BT0434 0.70 +0.2 523,358 - BT0434 0.74 -2.9 523,695 - -0.7 523,796 - -1.5 523,859 - -0.5 523,898 - +0.9 524,252 - BT0435 0.33 -1.8 524,280 - BT0435 0.36 -1.9 524,316 - BT0435 0.39 -2.6 524,362 - BT0435 0.43 -1.6 524,486 - BT0435 0.54 -0.1
Or see this region's nucleotide sequence