Experiment: KB with Khayasin C 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3556 and Psyr_3557 are separated by 69 nucleotides Psyr_3557 and Psyr_3558 are separated by 504 nucleotides
Psyr_3556: Psyr_3556 - alanyl-tRNA synthetase, at 4,235,102 to 4,237,801
_3556
Psyr_3557: Psyr_3557 - L-threonine aldolase, at 4,237,871 to 4,238,875
_3557
Psyr_3558: Psyr_3558 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,239,380 to 4,239,892
_3558
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.807 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.974 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.359 kb on - strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.611 kb on - strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.952 kb on + strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.953 kb on - strand at 4238.960 kb on - strand at 4238.995 kb on + strand at 4238.995 kb on + strand at 4238.995 kb on + strand at 4238.996 kb on - strand at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.014 kb on + strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.077 kb on + strand at 4239.077 kb on + strand at 4239.078 kb on - strand at 4239.145 kb on + strand at 4239.182 kb on + strand at 4239.229 kb on + strand at 4239.229 kb on + strand at 4239.277 kb on - strand at 4239.277 kb on - strand at 4239.284 kb on - strand at 4239.316 kb on + strand at 4239.481 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM remove 4,237,803 - -0.5 4,237,803 - -0.9 4,237,803 - -0.0 4,237,803 - -0.5 4,237,803 - -0.4 4,237,805 - -0.8 4,237,805 - +0.7 4,237,805 - -2.3 4,237,807 - -1.1 4,237,853 - +2.2 4,237,853 - +0.2 4,237,853 - -0.9 4,237,853 - +1.2 4,237,974 - Psyr_3557 0.10 +0.1 4,238,035 - Psyr_3557 0.16 -0.1 4,238,035 - Psyr_3557 0.16 +0.7 4,238,035 - Psyr_3557 0.16 +1.8 4,238,035 - Psyr_3557 0.16 -0.9 4,238,035 - Psyr_3557 0.16 +0.7 4,238,152 - Psyr_3557 0.28 -1.3 4,238,152 - Psyr_3557 0.28 -0.1 4,238,359 - Psyr_3557 0.49 -0.3 4,238,610 + Psyr_3557 0.74 -0.2 4,238,610 + Psyr_3557 0.74 -1.8 4,238,610 + Psyr_3557 0.74 -1.4 4,238,610 + Psyr_3557 0.74 -1.8 4,238,610 + Psyr_3557 0.74 -1.1 4,238,610 + Psyr_3557 0.74 -3.8 4,238,610 + Psyr_3557 0.74 -0.5 4,238,611 - Psyr_3557 0.74 -0.1 4,238,614 + Psyr_3557 0.74 -0.8 4,238,614 + Psyr_3557 0.74 -0.5 4,238,614 + Psyr_3557 0.74 -1.1 4,238,614 + Psyr_3557 0.74 +0.7 4,238,614 + Psyr_3557 0.74 -0.4 4,238,614 + Psyr_3557 0.74 -0.8 4,238,614 + Psyr_3557 0.74 -1.8 4,238,615 - Psyr_3557 0.74 +0.9 4,238,615 - Psyr_3557 0.74 -0.3 4,238,615 - Psyr_3557 0.74 -0.1 4,238,615 - Psyr_3557 0.74 -1.5 4,238,615 - Psyr_3557 0.74 +0.1 4,238,615 - Psyr_3557 0.74 -0.2 4,238,615 - Psyr_3557 0.74 +0.4 4,238,615 - Psyr_3557 0.74 -0.4 4,238,616 + Psyr_3557 0.74 +1.1 4,238,616 + Psyr_3557 0.74 -0.8 4,238,616 + Psyr_3557 0.74 +0.0 4,238,616 + Psyr_3557 0.74 +0.7 4,238,616 + Psyr_3557 0.74 -1.8 4,238,616 + Psyr_3557 0.74 +0.3 4,238,616 + Psyr_3557 0.74 +0.1 4,238,616 + Psyr_3557 0.74 -1.1 4,238,616 + Psyr_3557 0.74 -0.0 4,238,617 - Psyr_3557 0.74 +0.1 4,238,617 - Psyr_3557 0.74 +0.7 4,238,617 - Psyr_3557 0.74 -0.3 4,238,617 - Psyr_3557 0.74 -0.6 4,238,617 - Psyr_3557 0.74 -0.3 4,238,617 - Psyr_3557 0.74 +0.6 4,238,643 + Psyr_3557 0.77 -1.7 4,238,643 + Psyr_3557 0.77 -1.0 4,238,643 + Psyr_3557 0.77 -0.6 4,238,644 - Psyr_3557 0.77 +0.6 4,238,644 - Psyr_3557 0.77 +0.1 4,238,644 - Psyr_3557 0.77 -0.7 4,238,644 - Psyr_3557 0.77 -0.2 4,238,644 - Psyr_3557 0.77 -0.9 4,238,644 - Psyr_3557 0.77 -2.3 4,238,644 - Psyr_3557 0.77 -0.6 4,238,644 - Psyr_3557 0.77 -0.0 4,238,644 - Psyr_3557 0.77 +0.1 4,238,644 - Psyr_3557 0.77 +2.6 4,238,952 + -0.1 4,238,952 + -0.3 4,238,952 + +0.4 4,238,952 + +0.5 4,238,952 + -1.0 4,238,952 + -1.3 4,238,952 + +0.2 4,238,952 + +0.7 4,238,952 + -0.8 4,238,953 - -0.6 4,238,953 - +0.4 4,238,953 - +0.9 4,238,953 - +0.2 4,238,953 - +0.6 4,238,953 - +0.2 4,238,953 - +0.9 4,238,953 - +0.8 4,238,953 - +0.4 4,238,953 - +0.2 4,238,960 - +0.0 4,238,995 + +0.1 4,238,995 + +0.5 4,238,995 + +0.4 4,238,996 - +1.7 4,239,012 + +1.2 4,239,012 + -0.6 4,239,012 + -0.3 4,239,013 - -0.2 4,239,013 - -0.8 4,239,013 - -0.4 4,239,014 + -0.2 4,239,015 - -1.0 4,239,015 - +0.8 4,239,015 - -0.5 4,239,050 + +0.2 4,239,050 + +1.1 4,239,050 + -0.3 4,239,051 - +0.3 4,239,051 - -1.1 4,239,051 - +0.8 4,239,051 - +0.5 4,239,051 - +0.8 4,239,051 - -1.5 4,239,077 + +3.1 4,239,077 + +1.2 4,239,078 - -1.1 4,239,145 + +1.2 4,239,182 + +0.7 4,239,229 + -0.9 4,239,229 + +0.9 4,239,277 - -1.7 4,239,277 - +0.1 4,239,284 - +0.5 4,239,316 + +1.5 4,239,481 + Psyr_3558 0.20 +0.4 4,239,647 + Psyr_3558 0.52 +0.1 4,239,647 + Psyr_3558 0.52 -2.3 4,239,648 - Psyr_3558 0.52 +0.5 4,239,648 - Psyr_3558 0.52 -0.6 4,239,648 - Psyr_3558 0.52 +2.2 4,239,648 - Psyr_3558 0.52 +0.9 4,239,648 - Psyr_3558 0.52 +0.3
Or see this region's nucleotide sequence