Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2709

Experiment: KB with Khayasin C 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2708 and Psyr_2709 are separated by 73 nucleotidesPsyr_2709 and Psyr_2710 are separated by 0 nucleotidesPsyr_2710 and Psyr_2711 are separated by 74 nucleotides Psyr_2708: Psyr_2708 - Rieske [2Fe-2S] region, at 3,289,110 to 3,290,174 _2708 Psyr_2709: Psyr_2709 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 3,290,248 to 3,291,198 _2709 Psyr_2710: Psyr_2710 - transcriptional regulator, GntR family, at 3,291,199 to 3,291,909 _2710 Psyr_2711: Psyr_2711 - diguanylate cyclase/phosphodiesterase, at 3,291,984 to 3,293,954 _2711 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3289.281 kb on + strand, within Psyr_2708at 3289.281 kb on + strand, within Psyr_2708at 3289.281 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.585 kb on - strand, within Psyr_2708at 3289.912 kb on - strand, within Psyr_2708at 3289.912 kb on - strand, within Psyr_2708at 3290.195 kb on + strandat 3290.274 kb on + strandat 3290.395 kb on + strand, within Psyr_2709at 3290.657 kb on - strand, within Psyr_2709at 3290.772 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.896 kb on + strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709at 3291.525 kb on - strand, within Psyr_2710at 3292.078 kb on + strandat 3292.079 kb on - strandat 3292.079 kb on - strandat 3292.085 kb on - strandat 3292.100 kb on + strandat 3292.100 kb on + strandat 3292.100 kb on + strandat 3292.100 kb on + strandat 3292.100 kb on + strandat 3292.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM
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3,289,281 + Psyr_2708 0.16 -0.9
3,289,281 + Psyr_2708 0.16 +0.7
3,289,281 + Psyr_2708 0.16 -1.8
3,289,584 + Psyr_2708 0.45 +0.0
3,289,584 + Psyr_2708 0.45 -0.7
3,289,584 + Psyr_2708 0.45 +0.5
3,289,584 + Psyr_2708 0.45 -0.9
3,289,584 + Psyr_2708 0.45 +2.0
3,289,585 - Psyr_2708 0.45 +1.0
3,289,912 - Psyr_2708 0.75 +0.4
3,289,912 - Psyr_2708 0.75 -0.7
3,290,195 + +0.5
3,290,274 + -2.2
3,290,395 + Psyr_2709 0.15 +1.5
3,290,657 - Psyr_2709 0.43 +1.5
3,290,772 + Psyr_2709 0.55 +0.9
3,290,809 + Psyr_2709 0.59 +1.5
3,290,809 + Psyr_2709 0.59 +0.3
3,290,809 + Psyr_2709 0.59 +0.7
3,290,809 + Psyr_2709 0.59 +0.3
3,290,809 + Psyr_2709 0.59 +0.5
3,290,809 + Psyr_2709 0.59 +0.1
3,290,809 + Psyr_2709 0.59 -1.5
3,290,810 - Psyr_2709 0.59 -0.5
3,290,810 - Psyr_2709 0.59 +0.3
3,290,810 - Psyr_2709 0.59 +1.2
3,290,810 - Psyr_2709 0.59 -0.1
3,290,839 + Psyr_2709 0.62 +2.5
3,290,839 + Psyr_2709 0.62 -1.0
3,290,839 + Psyr_2709 0.62 -1.1
3,290,839 + Psyr_2709 0.62 +1.7
3,290,839 + Psyr_2709 0.62 +1.1
3,290,839 + Psyr_2709 0.62 +0.7
3,290,839 + Psyr_2709 0.62 +1.5
3,290,839 + Psyr_2709 0.62 -0.1
3,290,840 - Psyr_2709 0.62 -1.4
3,290,840 - Psyr_2709 0.62 -2.8
3,290,840 - Psyr_2709 0.62 +0.8
3,290,840 - Psyr_2709 0.62 +1.0
3,290,840 - Psyr_2709 0.62 +0.5
3,290,840 - Psyr_2709 0.62 -2.4
3,290,840 - Psyr_2709 0.62 +0.9
3,290,840 - Psyr_2709 0.62 +1.5
3,290,840 - Psyr_2709 0.62 -0.1
3,290,840 - Psyr_2709 0.62 -0.3
3,290,840 - Psyr_2709 0.62 +0.4
3,290,896 + Psyr_2709 0.68 +0.1
3,290,897 - Psyr_2709 0.68 +1.2
3,290,897 - Psyr_2709 0.68 -0.3
3,290,897 - Psyr_2709 0.68 -0.1
3,291,525 - Psyr_2710 0.46 -0.9
3,292,078 + -1.7
3,292,079 - -0.4
3,292,079 - +0.8
3,292,085 - -0.2
3,292,100 + +0.1
3,292,100 + +1.1
3,292,100 + -1.2
3,292,100 + +0.5
3,292,100 + -1.5
3,292,101 - +0.2

Or see this region's nucleotide sequence