Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2627

Experiment: KB with Khayasin C 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2626 and Psyr_2627 overlap by 11 nucleotidesPsyr_2627 and Psyr_2628 overlap by 17 nucleotidesPsyr_2628 and Psyr_2629 are separated by 1 nucleotides Psyr_2626: Psyr_2626 - Protein of unknown function DUF323, at 3,185,586 to 3,187,133 _2626 Psyr_2627: Psyr_2627 - Protein of unknown function DUF214, at 3,187,123 to 3,188,346 _2627 Psyr_2628: Psyr_2628 - ABC transporter, at 3,188,330 to 3,189,022 _2628 Psyr_2629: Psyr_2629 - von Willebrand factor, type A, at 3,189,024 to 3,191,015 _2629 Position (kb) 3187 3188 3189Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3186.268 kb on + strand, within Psyr_2626at 3186.268 kb on + strand, within Psyr_2626at 3186.269 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.634 kb on - strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.732 kb on + strand, within Psyr_2626at 3186.811 kb on + strand, within Psyr_2626at 3186.812 kb on - strand, within Psyr_2626at 3186.812 kb on - strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strandat 3186.827 kb on - strand, within Psyr_2626at 3186.829 kb on + strand, within Psyr_2626at 3186.840 kb on - strand, within Psyr_2626at 3186.873 kb on - strand, within Psyr_2626at 3186.894 kb on + strand, within Psyr_2626at 3186.894 kb on + strandat 3186.894 kb on + strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.904 kb on + strand, within Psyr_2626at 3187.004 kb on + strandat 3187.014 kb on + strandat 3187.015 kb on - strandat 3187.015 kb on - strandat 3187.042 kb on + strandat 3187.316 kb on + strand, within Psyr_2627at 3187.465 kb on + strand, within Psyr_2627at 3187.465 kb on + strand, within Psyr_2627at 3187.466 kb on - strand, within Psyr_2627at 3187.466 kb on - strand, within Psyr_2627at 3187.467 kb on + strand, within Psyr_2627at 3187.468 kb on - strand, within Psyr_2627at 3187.468 kb on - strand, within Psyr_2627at 3187.546 kb on + strand, within Psyr_2627at 3187.546 kb on + strand, within Psyr_2627at 3187.547 kb on - strand, within Psyr_2627at 3187.547 kb on - strand, within Psyr_2627at 3187.584 kb on + strand, within Psyr_2627at 3187.584 kb on + strand, within Psyr_2627at 3187.671 kb on + strand, within Psyr_2627at 3187.671 kb on + strand, within Psyr_2627at 3187.750 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627at 3188.428 kb on + strand, within Psyr_2628at 3188.429 kb on - strand, within Psyr_2628at 3188.491 kb on + strand, within Psyr_2628at 3188.513 kb on - strand, within Psyr_2628at 3188.513 kb on - strand, within Psyr_2628at 3188.771 kb on + strand, within Psyr_2628at 3188.771 kb on + strand, within Psyr_2628at 3188.771 kb on + strand, within Psyr_2628at 3188.771 kb on + strand, within Psyr_2628at 3188.772 kb on - strand, within Psyr_2628at 3188.772 kb on - strand, within Psyr_2628at 3188.772 kb on - strand, within Psyr_2628at 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.115 kb on + strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.116 kb on - strandat 3189.227 kb on - strand, within Psyr_2629at 3189.244 kb on + strand, within Psyr_2629

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM
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3,186,268 + Psyr_2626 0.44 -0.7
3,186,268 + Psyr_2626 0.44 -1.9
3,186,269 - Psyr_2626 0.44 +2.6
3,186,272 - Psyr_2626 0.44 -0.3
3,186,272 - Psyr_2626 0.44 +0.2
3,186,272 - Psyr_2626 0.44 -2.4
3,186,272 - Psyr_2626 0.44 -0.2
3,186,634 - Psyr_2626 0.68 -0.9
3,186,688 + Psyr_2626 0.71 +0.1
3,186,688 + Psyr_2626 0.71 +0.6
3,186,688 + Psyr_2626 0.71 +0.9
3,186,689 - Psyr_2626 0.71 +1.4
3,186,689 - Psyr_2626 0.71 +0.4
3,186,689 - Psyr_2626 0.71 -0.9
3,186,689 - Psyr_2626 0.71 +0.8
3,186,689 - Psyr_2626 0.71 -0.2
3,186,689 - Psyr_2626 0.71 +0.7
3,186,689 - Psyr_2626 0.71 +0.4
3,186,689 - Psyr_2626 0.71 +1.4
3,186,689 - Psyr_2626 0.71 +0.7
3,186,732 + Psyr_2626 0.74 -2.0
3,186,811 + Psyr_2626 0.79 +0.2
3,186,812 - Psyr_2626 0.79 +0.9
3,186,812 - Psyr_2626 0.79 +1.0
3,186,826 + Psyr_2626 0.80 -1.1
3,186,826 + Psyr_2626 0.80 +0.9
3,186,826 + Psyr_2626 0.80 -2.0
3,186,826 + -0.6
3,186,827 - Psyr_2626 0.80 -0.9
3,186,829 + Psyr_2626 0.80 -1.6
3,186,840 - Psyr_2626 0.81 +0.4
3,186,873 - Psyr_2626 0.83 -1.6
3,186,894 + Psyr_2626 0.84 -0.9
3,186,894 + -0.9
3,186,894 + Psyr_2626 0.84 +0.6
3,186,895 - Psyr_2626 0.85 -0.3
3,186,895 - Psyr_2626 0.85 -0.0
3,186,895 - Psyr_2626 0.85 +0.3
3,186,895 - Psyr_2626 0.85 -0.6
3,186,904 + Psyr_2626 0.85 -0.7
3,187,004 + +1.1
3,187,014 + +0.2
3,187,015 - +1.0
3,187,015 - -2.0
3,187,042 + -0.4
3,187,316 + Psyr_2627 0.16 +3.0
3,187,465 + Psyr_2627 0.28 +1.3
3,187,465 + Psyr_2627 0.28 -0.0
3,187,466 - Psyr_2627 0.28 +0.3
3,187,466 - Psyr_2627 0.28 +1.0
3,187,467 + Psyr_2627 0.28 +0.4
3,187,468 - Psyr_2627 0.28 -0.2
3,187,468 - Psyr_2627 0.28 -0.0
3,187,546 + Psyr_2627 0.35 +0.8
3,187,546 + Psyr_2627 0.35 -0.6
3,187,547 - Psyr_2627 0.35 +0.7
3,187,547 - Psyr_2627 0.35 -0.1
3,187,584 + Psyr_2627 0.38 +0.3
3,187,584 + Psyr_2627 0.38 -0.4
3,187,671 + Psyr_2627 0.45 -0.3
3,187,671 + Psyr_2627 0.45 -1.1
3,187,750 + Psyr_2627 0.51 +1.3
3,188,123 + Psyr_2627 0.82 +0.8
3,188,123 + Psyr_2627 0.82 +0.7
3,188,123 + Psyr_2627 0.82 -0.0
3,188,428 + Psyr_2628 0.14 -0.9
3,188,429 - Psyr_2628 0.14 +0.2
3,188,491 + Psyr_2628 0.23 +1.8
3,188,513 - Psyr_2628 0.26 +1.7
3,188,513 - Psyr_2628 0.26 +0.1
3,188,771 + Psyr_2628 0.64 -0.5
3,188,771 + Psyr_2628 0.64 -1.0
3,188,771 + Psyr_2628 0.64 -2.2
3,188,771 + Psyr_2628 0.64 +0.4
3,188,772 - Psyr_2628 0.64 +1.1
3,188,772 - Psyr_2628 0.64 +1.3
3,188,772 - Psyr_2628 0.64 -0.3
3,189,115 + +0.0
3,189,115 + +1.8
3,189,115 + +0.4
3,189,115 + +0.1
3,189,115 + +0.0
3,189,115 + -1.4
3,189,115 + -0.2
3,189,116 - -2.5
3,189,116 - +0.2
3,189,116 - +1.1
3,189,116 - -0.0
3,189,116 - -0.0
3,189,116 - +1.8
3,189,116 - -1.0
3,189,227 - Psyr_2629 0.10 -1.2
3,189,244 + Psyr_2629 0.11 -0.2

Or see this region's nucleotide sequence