Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2179

Experiment: KB with Khayasin C 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Khayasin C 10 mM
2,531,777	+				-0.7
2,531,778	-				+1.1
2,531,790	+				-0.1
2,531,792	+				+0.3
2,531,792	+				+0.4
2,531,883	-				-0.9
2,531,946	-				-0.1
2,532,032	+				+1.0
2,532,154	+				-0.1
2,532,154	+				-0.7
2,532,154	+				-1.6
2,532,154	+				+1.3
2,532,155	-				+0.5
2,532,155	-				+1.0
2,532,155	-				+0.8
2,532,155	-				+0.6
2,532,155	-				+0.2
2,532,183	+				-0.2
2,532,318	+				+1.0
2,532,318	+				+0.4
2,532,318	+				+0.7
2,532,318	+				+0.6
2,532,318	+				-0.3
2,532,318	+				+0.5
2,532,318	+				-0.5
2,532,319	-				+0.2
2,532,319	-				+0.0
2,532,319	-				-0.4
2,532,319	-				+1.1
2,532,372	-				-0.4
2,532,375	-				-0.9
2,532,387	+		Psyr_2179	0.11	+0.5
2,532,387	+		Psyr_2179	0.11	+0.5
2,532,387	+		Psyr_2179	0.11	+0.8
2,532,388	-		Psyr_2179	0.11	+0.7
2,532,388	-		Psyr_2179	0.11	+3.6
2,532,400	-		Psyr_2179	0.11	-0.2
2,532,438	+		Psyr_2179	0.14	+0.3
2,532,478	-		Psyr_2179	0.17	-2.2
2,532,478	-		Psyr_2179	0.17	+0.7
2,532,553	-		Psyr_2179	0.23	+0.1
2,532,598	+		Psyr_2179	0.26	+0.9
2,532,598	+		Psyr_2179	0.26	-1.3
2,532,599	-		Psyr_2179	0.26	-1.5
2,532,599	-		Psyr_2179	0.26	+0.6
2,532,627	+		Psyr_2179	0.28	+0.5
2,532,628	-		Psyr_2179	0.28	-0.5
2,532,648	-		Psyr_2179	0.29	+1.0
2,532,676	+		Psyr_2179	0.32	+0.4
2,532,676	+		Psyr_2179	0.32	-0.1
2,532,676	+		Psyr_2179	0.32	-1.0
2,532,676	+		Psyr_2179	0.32	+0.4
2,532,676	+		Psyr_2179	0.32	+1.1
2,532,676	+		Psyr_2179	0.32	+0.2
2,532,676	+		Psyr_2179	0.32	+0.8
2,532,677	-		Psyr_2179	0.32	+1.7
2,532,816	+		Psyr_2179	0.42	-1.4
2,532,816	+		Psyr_2179	0.42	+0.6
2,532,816	+		Psyr_2179	0.42	+1.3
2,532,816	+				-0.7
2,532,816	+		Psyr_2179	0.42	+1.3
2,532,816	+		Psyr_2179	0.42	+0.7
2,532,816	+		Psyr_2179	0.42	+0.9
2,532,816	+		Psyr_2179	0.42	+1.3
2,532,817	-		Psyr_2179	0.42	-0.8
2,532,817	-		Psyr_2179	0.42	-0.5
2,532,817	-		Psyr_2179	0.42	-0.7
2,532,817	-		Psyr_2179	0.42	-1.4
2,532,817	-		Psyr_2179	0.42	+0.6
2,532,817	-		Psyr_2179	0.42	+0.3
2,532,831	+		Psyr_2179	0.43	-0.5
2,532,832	-		Psyr_2179	0.43	-0.5
2,532,837	+		Psyr_2179	0.43	+0.6
2,532,838	-		Psyr_2179	0.43	-0.5
2,532,838	-		Psyr_2179	0.43	+0.7
2,532,838	-		Psyr_2179	0.43	-0.1
2,532,905	+		Psyr_2179	0.48	+0.1
2,532,973	-		Psyr_2179	0.53	+0.6
2,532,986	-		Psyr_2179	0.54	-0.3
2,532,986	-		Psyr_2179	0.54	-1.4
2,532,986	-		Psyr_2179	0.54	+0.2
2,532,991	+		Psyr_2179	0.54	-0.4
2,532,992	-		Psyr_2179	0.54	+0.2
2,532,992	-		Psyr_2179	0.54	-1.7
2,533,064	+		Psyr_2179	0.60	+0.9
2,533,064	+		Psyr_2179	0.60	-0.2
2,533,064	+		Psyr_2179	0.60	+0.0
2,533,065	-		Psyr_2179	0.60	-0.3
2,533,065	-		Psyr_2179	0.60	+1.7
2,533,113	+		Psyr_2179	0.63	-0.0
2,533,167	+		Psyr_2179	0.67	+1.1
2,533,167	+		Psyr_2179	0.67	-0.4
2,533,167	+		Psyr_2179	0.67	+2.1
2,533,167	+		Psyr_2179	0.67	-0.9
2,533,167	+		Psyr_2179	0.67	-0.2
2,533,167	+		Psyr_2179	0.67	+1.1
2,533,167	+		Psyr_2179	0.67	+0.4
2,533,167	+		Psyr_2179	0.67	+0.7
2,533,168	-		Psyr_2179	0.67	+0.8
2,533,168	-		Psyr_2179	0.67	-2.0
2,533,168	-		Psyr_2179	0.67	+0.3
2,533,185	+		Psyr_2179	0.68	-0.5
2,533,264	-		Psyr_2179	0.74	+0.7
2,533,318	+		Psyr_2179	0.78	+1.4
2,533,319	-		Psyr_2179	0.78	+0.1
2,533,470	+		Psyr_2179	0.89	+0.1
2,533,470	+		Psyr_2179	0.89	+0.2
2,533,471	-		Psyr_2179	0.89	+0.6
2,533,471	-		Psyr_2179	0.89	-1.0
2,533,471	-		Psyr_2179	0.89	+0.4
2,533,481	-				+0.3
2,533,488	+				+0.5
2,533,488	+				+0.1
2,533,488	+				+0.6
2,533,489	-				-0.3
2,533,504	-				-1.2
2,533,683	+				-2.5
2,533,683	+				+0.3
2,533,684	-				+1.0
2,533,684	-				+0.8
2,533,758	+				+0.4
2,533,758	+				+0.0
2,533,758	+				-0.1
2,533,758	+				+0.3
2,533,758	+				-0.5
2,533,758	+				+0.1
2,533,758	+				+0.6
2,533,759	-				-2.9
2,533,759	-				+0.6
2,533,759	-				-0.2
2,533,759	-				-0.2
2,533,759	-				+0.3
2,533,759	-				-0.0
2,533,760	+				-0.2
2,533,760	+				-0.4
2,533,760	+				-0.3
2,533,761	-				-0.7
2,533,761	-				+0.1
2,533,761	-				-1.9
2,533,761	-				-1.9
2,533,787	+				-0.8
2,533,787	+				-0.9
2,533,787	+				+1.7
2,533,787	+				-1.6
2,533,788	-				-0.8
2,533,788	-				-0.9
2,533,788	-				+1.7
2,533,789	+				+1.1
2,533,820	-				-2.8
2,533,821	+				+0.2
2,533,822	+				-0.2
2,533,822	+				+0.3
2,533,822	+				+0.3
2,533,823	-				+0.3
2,533,823	-				+2.3
2,533,823	-				-1.5
2,533,850	+				-0.1
2,533,918	+				-1.4
2,533,919	-				-2.0
2,533,921	+				+0.3
2,533,922	-				-0.8
2,533,939	+				-0.4
2,533,961	+				+0.0
2,533,961	+				-1.0
2,534,005	-				+1.6
2,534,015	+				+0.9
2,534,067	+				-0.3
2,534,067	+				-0.9
2,534,068	-				+2.3
2,534,075	+				-0.6
2,534,075	+				+0.8
2,534,076	-				-1.2
2,534,076	-				-1.4
2,534,078	+				+0.1
2,534,078	+				+0.6
2,534,078	+				-1.4
2,534,079	-				-0.4
2,534,079	-				+0.3
2,534,079	-				-0.5
2,534,079	-				-2.2
2,534,168	-				+0.4
2,534,259	+		Psyr_2180	0.15	-0.5
2,534,259	+		Psyr_2180	0.15	-2.1
2,534,449	+		Psyr_2180	0.35	+0.7
2,534,449	+		Psyr_2180	0.35	-0.6
2,534,515	-		Psyr_2180	0.42	-0.0
2,534,583	-		Psyr_2180	0.50	-1.9