Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1981

Experiment: KB with Khayasin C 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Khayasin C 10 mM
2,298,731	+				+0.6
2,298,731	+				-0.8
2,298,731	+				-1.4
2,298,732	-				-0.3
2,298,732	-				+0.4
2,298,769	+				-0.9
2,298,770	-				+0.5
2,298,770	-				+0.5
2,298,870	+				+0.7
2,298,871	-				-2.8
2,298,908	-				-0.4
2,298,944	+				+0.5
2,298,945	-				+1.3
2,299,053	+		Psyr_1980	0.26	-0.7
2,299,053	+		Psyr_1980	0.26	+1.5
2,299,054	-		Psyr_1980	0.26	-1.6
2,299,200	+		Psyr_1980	0.59	+0.1
2,299,201	-		Psyr_1980	0.59	-0.6
2,299,201	-		Psyr_1980	0.59	+0.9
2,299,201	-		Psyr_1980	0.59	+1.5
2,299,259	+		Psyr_1980	0.72	-0.3
2,299,413	+				-0.5
2,299,414	-				-1.6
2,299,538	+				-1.0
2,299,547	+				-2.2
2,299,547	+				-0.4
2,299,547	-				+0.8
2,299,548	-				-0.0
2,299,548	-				-0.3
2,299,548	-				-2.0
2,299,553	+				-0.0
2,299,554	-				+0.3
2,299,554	-				-0.3
2,299,742	+		Psyr_1981	0.13	-0.1
2,299,742	+		Psyr_1981	0.13	+1.0
2,299,742	+		Psyr_1981	0.13	-0.6
2,299,742	+		Psyr_1981	0.13	+0.8
2,299,742	+		Psyr_1981	0.13	+0.8
2,299,743	-		Psyr_1981	0.13	+0.7
2,299,743	-		Psyr_1981	0.13	-0.7
2,299,851	+		Psyr_1981	0.18	+0.4
2,299,852	-		Psyr_1981	0.18	-3.1
2,299,960	-		Psyr_1981	0.23	+0.9
2,300,043	+		Psyr_1981	0.27	+0.1
2,300,043	+		Psyr_1981	0.27	-0.3
2,300,044	-		Psyr_1981	0.27	+0.1
2,300,083	+		Psyr_1981	0.29	-0.4
2,300,083	+		Psyr_1981	0.29	+2.3
2,300,083	+		Psyr_1981	0.29	+1.0
2,300,084	-		Psyr_1981	0.29	+1.0
2,300,084	-		Psyr_1981	0.29	-0.7
2,300,084	-		Psyr_1981	0.29	-0.6
2,300,117	+		Psyr_1981	0.30	+1.1
2,300,162	+		Psyr_1981	0.32	-0.1
2,300,162	+		Psyr_1981	0.32	+1.9
2,300,162	+		Psyr_1981	0.32	-0.4
2,300,162	+		Psyr_1981	0.32	+0.7
2,300,162	+		Psyr_1981	0.32	+0.7
2,300,163	-		Psyr_1981	0.33	+0.5
2,300,163	-		Psyr_1981	0.33	-0.0
2,300,163	-		Psyr_1981	0.33	+0.3
2,300,163	-		Psyr_1981	0.33	-1.0
2,300,163	-		Psyr_1981	0.33	+1.0
2,300,163	-		Psyr_1981	0.33	-0.1
2,300,527	+		Psyr_1981	0.49	+0.6
2,300,884	+		Psyr_1981	0.65	+0.4
2,300,884	+		Psyr_1981	0.65	-0.2
2,300,886	+		Psyr_1981	0.65	-0.2
2,300,887	-		Psyr_1981	0.66	-0.7
2,300,887	-		Psyr_1981	0.66	+0.3
2,301,021	+		Psyr_1981	0.72	-0.8
2,301,021	+		Psyr_1981	0.72	+1.3
2,301,021	+		Psyr_1981	0.72	+0.3
2,301,086	+		Psyr_1981	0.75	-0.2
2,301,305	+		Psyr_1981	0.85	+0.8
2,301,350	+		Psyr_1981	0.87	-1.6
2,301,351	-		Psyr_1981	0.87	-2.6
2,301,351	-		Psyr_1981	0.87	+0.6
2,301,704	-				+0.9
2,301,782	+				-0.1
2,301,783	-				-1.5
2,301,783	-				-0.3
2,301,787	+				-0.4
2,301,788	-				-0.1
2,301,788	-				-0.2
2,301,788	-				+0.3
2,301,805	+		Psyr_1982	0.11	-0.2
2,301,906	+		Psyr_1982	0.23	-3.2
2,301,906	+		Psyr_1982	0.23	+0.3
2,301,906	+		Psyr_1982	0.23	-0.1
2,301,907	-		Psyr_1982	0.23	-0.8
2,301,908	+		Psyr_1982	0.23	-1.5
2,301,908	+		Psyr_1982	0.23	+0.9
2,301,908	+		Psyr_1982	0.23	-0.3
2,301,908	+		Psyr_1982	0.23	+1.4
2,301,908	+		Psyr_1982	0.23	-0.0
2,301,908	+		Psyr_1982	0.23	+0.1
2,301,908	+		Psyr_1982	0.23	+0.6
2,301,908	+		Psyr_1982	0.23	-0.4
2,301,908	+		Psyr_1982	0.23	+0.3
2,301,908	+		Psyr_1982	0.23	+0.2
2,301,908	+		Psyr_1982	0.23	+0.6
2,301,909	-		Psyr_1982	0.23	-0.2
2,301,909	-		Psyr_1982	0.23	+0.4
2,301,909	-		Psyr_1982	0.23	+1.6
2,301,909	-		Psyr_1982	0.23	-0.2
2,301,909	-		Psyr_1982	0.23	-1.0
2,301,909	-		Psyr_1982	0.23	+0.4
2,301,909	-		Psyr_1982	0.23	+1.7
2,301,909	-		Psyr_1982	0.23	+0.1
2,301,909	-		Psyr_1982	0.23	-1.4
2,301,909	-		Psyr_1982	0.23	-0.1
2,301,909	-		Psyr_1982	0.23	-0.9
2,301,909	-		Psyr_1982	0.23	-1.5
2,301,909	-		Psyr_1982	0.23	-1.8
2,301,909	-		Psyr_1982	0.23	-0.9
2,301,909	-		Psyr_1982	0.23	+0.9
2,301,909	-		Psyr_1982	0.23	+0.3
2,301,979	-		Psyr_1982	0.31	+0.1
2,302,021	-		Psyr_1982	0.36	+1.1
2,302,140	+		Psyr_1982	0.50	+2.5
2,302,140	+		Psyr_1982	0.50	+0.0
2,302,141	-		Psyr_1982	0.50	+0.5
2,302,252	+		Psyr_1982	0.63	-0.3
2,302,252	+		Psyr_1982	0.63	+0.3
2,302,373	+		Psyr_1982	0.76	-1.6
2,302,374	-		Psyr_1982	0.77	-0.3
2,302,638	+				+0.4
2,302,639	-				+0.5