Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1367

Experiment: KB with Khayasin C 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Khayasin C 10 mM
1,549,509	+				-0.3
1,549,509	+				+1.1
1,549,515	-				-0.2
1,549,515	-				-0.5
1,549,515	-				-0.6
1,549,563	-		Psyr_1366	0.10	+1.0
1,549,646	+		Psyr_1366	0.20	-0.9
1,549,646	+		Psyr_1366	0.20	+2.4
1,549,646	+		Psyr_1366	0.20	+1.2
1,549,647	-		Psyr_1366	0.20	+0.8
1,549,647	-		Psyr_1366	0.20	-1.9
1,549,647	-		Psyr_1366	0.20	+1.2
1,549,649	+		Psyr_1366	0.20	-0.1
1,549,649	+		Psyr_1366	0.20	+0.6
1,549,649	+		Psyr_1366	0.20	+0.6
1,549,650	-		Psyr_1366	0.20	+0.9
1,549,650	-		Psyr_1366	0.20	-0.6
1,549,713	+		Psyr_1366	0.27	-0.6
1,549,713	+		Psyr_1366	0.27	+1.1
1,549,713	+		Psyr_1366	0.27	+0.1
1,549,714	-		Psyr_1366	0.27	-0.2
1,549,850	+		Psyr_1366	0.42	-0.3
1,549,850	+		Psyr_1366	0.42	-0.1
1,549,850	+		Psyr_1366	0.42	+0.6
1,549,851	-		Psyr_1366	0.42	+1.2
1,549,851	-		Psyr_1366	0.42	-0.2
1,549,851	-		Psyr_1366	0.42	+0.4
1,549,851	-		Psyr_1366	0.42	+1.7
1,549,851	-		Psyr_1366	0.42	-0.1
1,549,871	+		Psyr_1366	0.45	+1.8
1,549,871	+		Psyr_1366	0.45	-0.8
1,549,871	+		Psyr_1366	0.45	-0.5
1,549,871	+		Psyr_1366	0.45	+1.8
1,549,872	-		Psyr_1366	0.45	-0.0
1,549,872	-		Psyr_1366	0.45	-1.3
1,549,872	-		Psyr_1366	0.45	+0.6
1,549,872	-		Psyr_1366	0.45	+0.5
1,549,872	-		Psyr_1366	0.45	-0.7
1,549,872	-		Psyr_1366	0.45	-0.2
1,549,872	-		Psyr_1366	0.45	+1.0
1,549,872	-		Psyr_1366	0.45	-0.6
1,549,872	-		Psyr_1366	0.45	-0.4
1,549,872	-		Psyr_1366	0.45	+1.4
1,549,872	-		Psyr_1366	0.45	+0.3
1,549,872	-		Psyr_1366	0.45	+1.2
1,550,009	+		Psyr_1366	0.60	-0.9
1,550,010	-		Psyr_1366	0.60	-0.2
1,550,363	+				+0.2
1,550,363	+				+1.6
1,550,363	+				-0.6
1,550,364	-				-0.6
1,550,364	-				+0.8
1,550,380	+				+0.4
1,550,430	+				-0.9
1,550,430	+				+0.1
1,550,430	+				+0.5
1,550,431	-				+0.3
1,550,434	-				+0.8
1,550,434	-				+2.0
1,550,575	+				-0.5
1,550,576	-				-0.9
1,550,576	-				-0.3
1,550,578	+				-0.6
1,550,579	-				+0.2
1,550,607	+		Psyr_1367	0.12	-1.5
1,550,607	+		Psyr_1367	0.12	+0.1
1,550,607	+		Psyr_1367	0.12	-0.2
1,550,607	+		Psyr_1367	0.12	+0.5
1,550,608	-		Psyr_1367	0.12	-0.2
1,550,608	-		Psyr_1367	0.12	+0.8
1,550,608	-		Psyr_1367	0.12	+0.6
1,550,736	+		Psyr_1367	0.24	+1.6
1,550,736	+		Psyr_1367	0.24	-0.9
1,550,736	+		Psyr_1367	0.24	-0.7
1,550,737	-		Psyr_1367	0.24	-0.3
1,550,737	-		Psyr_1367	0.24	-2.0
1,550,737	-		Psyr_1367	0.24	+0.6
1,550,816	+		Psyr_1367	0.31	+0.4
1,550,853	+		Psyr_1367	0.34	+1.3
1,550,877	+		Psyr_1367	0.36	+0.9
1,550,877	+		Psyr_1367	0.36	-0.2
1,550,877	+		Psyr_1367	0.36	+1.6
1,550,877	+		Psyr_1367	0.36	-0.3
1,550,878	-		Psyr_1367	0.36	-0.3
1,550,878	-		Psyr_1367	0.36	+0.4
1,550,878	-		Psyr_1367	0.36	+0.1
1,550,904	+		Psyr_1367	0.39	+0.9
1,550,910	+		Psyr_1367	0.39	+1.1
1,550,912	-		Psyr_1367	0.40	-0.3
1,551,450	+		Psyr_1367	0.88	+0.4
1,551,450	+		Psyr_1367	0.88	-0.2
1,551,450	+		Psyr_1367	0.88	-0.1
1,551,450	+		Psyr_1367	0.88	-0.6
1,551,450	+		Psyr_1367	0.88	-0.6
1,551,450	+		Psyr_1367	0.88	-0.1
1,551,450	+		Psyr_1367	0.88	+0.8
1,551,450	+		Psyr_1367	0.88	+1.1
1,551,450	+		Psyr_1367	0.88	+0.1
1,551,451	-		Psyr_1367	0.88	+0.5
1,551,451	-		Psyr_1367	0.88	+0.5
1,551,451	-		Psyr_1367	0.88	+0.2
1,551,451	-		Psyr_1367	0.88	-0.9
1,551,451	-		Psyr_1367	0.88	+0.5
1,551,488	+				+0.6
1,551,489	-				-0.3
1,551,489	-				-1.5
1,551,633	+				+0.2
1,551,633	+				+0.6
1,551,633	+				+0.4
1,551,633	+				-0.2
1,551,633	+				-0.9
1,551,634	-				-0.5
1,551,634	-				+0.1
1,551,634	-				-0.1
1,551,643	+				+0.6
1,551,643	+				-0.4
1,551,643	+				+1.3
1,551,643	+				+1.0
1,551,644	-				+0.8
1,551,644	-				-1.6
1,551,644	-				+0.5
1,551,644	-				+0.8
1,551,655	+				+0.2
1,551,655	+				+1.1
1,551,655	+				+0.2
1,551,655	+				-0.1
1,551,656	-				+1.2
1,551,656	-				+0.2
1,551,656	-				-0.8
1,551,656	-				+0.1
1,551,657	+				+0.8
1,551,657	+				-0.5
1,551,657	+				-0.4
1,551,657	+				+0.8
1,551,657	+				-0.0
1,551,657	+				-1.4
1,551,657	+				+0.3
1,551,657	+				+0.5
1,551,657	+				-1.3
1,551,657	+				-1.1
1,551,657	+				-2.2
1,551,658	-				+0.8
1,551,658	-				-3.3
1,551,658	-				+0.3
1,551,658	-				+0.9
1,551,658	-				-0.4
1,551,658	-				-0.2
1,551,658	-				-0.2
1,551,658	-				+0.2
1,551,658	-				+0.2
1,551,658	-				+0.6
1,551,735	+				+0.7
1,551,783	+		Psyr_1368	0.12	+1.6
1,551,828	+		Psyr_1368	0.17	-0.0
1,551,828	+		Psyr_1368	0.17	-0.7
1,551,828	+		Psyr_1368	0.17	+0.2
1,551,828	+		Psyr_1368	0.17	-0.0
1,551,829	-		Psyr_1368	0.17	-0.3
1,551,852	-		Psyr_1368	0.20	-0.4
1,551,852	-		Psyr_1368	0.20	-0.2
1,551,930	-		Psyr_1368	0.29	+0.5
1,552,002	+		Psyr_1368	0.38	-0.2
1,552,002	+		Psyr_1368	0.38	-1.1
1,552,003	-		Psyr_1368	0.38	+3.0
1,552,003	-		Psyr_1368	0.38	+0.1
1,552,003	-		Psyr_1368	0.38	+0.1
1,552,026	+		Psyr_1368	0.41	+0.8
1,552,026	+		Psyr_1368	0.41	+0.8
1,552,026	+		Psyr_1368	0.41	-0.0
1,552,027	-		Psyr_1368	0.41	+1.4
1,552,027	-		Psyr_1368	0.41	-0.1
1,552,038	+		Psyr_1368	0.42	+0.1
1,552,053	+		Psyr_1368	0.44	+0.4
1,552,053	+		Psyr_1368	0.44	+1.1
1,552,053	+		Psyr_1368	0.44	-0.2
1,552,053	+		Psyr_1368	0.44	+1.2
1,552,054	-		Psyr_1368	0.44	+2.1
1,552,054	-		Psyr_1368	0.44	+1.6
1,552,054	-		Psyr_1368	0.44	+0.3
1,552,054	-		Psyr_1368	0.44	+0.4
1,552,054	-		Psyr_1368	0.44	+0.3
1,552,054	-		Psyr_1368	0.44	+1.7
1,552,461	+				-0.2
1,552,461	+				-0.1
1,552,461	+				-0.2
1,552,461	+				+2.4
1,552,462	-				+0.8
1,552,462	-				-0.8
1,552,462	-				+1.4
1,552,462	-				-0.6
1,552,524	+				-0.2
1,552,543	+				+0.2
1,552,543	+				-0.9