Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0664

Experiment: KB with Khayasin C 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0663 and Psyr_0664 are separated by 273 nucleotidesPsyr_0664 and Psyr_0665 are separated by 4 nucleotidesPsyr_0665 and Psyr_0666 overlap by 4 nucleotides Psyr_0663: Psyr_0663 - nucleoside-binding protein, at 751,440 to 752,534 _0663 Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599 _0664 Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572 _0665 Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558 _0666 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1 2 3at 751.820 kb on - strand, within Psyr_0663at 751.820 kb on - strand, within Psyr_0663at 751.859 kb on + strand, within Psyr_0663at 751.876 kb on - strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.981 kb on + strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 751.982 kb on - strand, within Psyr_0663at 752.023 kb on - strand, within Psyr_0663at 752.051 kb on - strand, within Psyr_0663at 752.051 kb on - strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.089 kb on + strand, within Psyr_0663at 752.090 kb on - strand, within Psyr_0663at 752.102 kb on - strand, within Psyr_0663at 752.102 kb on - strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.113 kb on + strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.114 kb on - strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.128 kb on + strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.129 kb on - strand, within Psyr_0663at 752.155 kb on + strand, within Psyr_0663at 752.252 kb on - strand, within Psyr_0663at 752.317 kb on + strand, within Psyr_0663at 752.317 kb on + strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.318 kb on - strand, within Psyr_0663at 752.380 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.413 kb on + strand, within Psyr_0663at 752.541 kb on + strandat 752.541 kb on + strandat 752.569 kb on + strandat 752.587 kb on - strandat 752.587 kb on - strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.632 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.639 kb on - strandat 752.650 kb on - strandat 752.679 kb on - strandat 752.679 kb on - strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 753.021 kb on - strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.102 kb on - strand, within Psyr_0664at 753.318 kb on + strand, within Psyr_0664at 753.594 kb on - strandat 753.594 kb on - strandat 753.765 kb on - strand, within Psyr_0665at 753.894 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.572 kb on + strandat 754.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM
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751,820 - Psyr_0663 0.35 +0.4
751,820 - Psyr_0663 0.35 +0.2
751,859 + Psyr_0663 0.38 +0.5
751,876 - Psyr_0663 0.40 +2.3
751,981 + Psyr_0663 0.49 +1.0
751,981 + Psyr_0663 0.49 -0.5
751,981 + Psyr_0663 0.49 -0.3
751,981 + Psyr_0663 0.49 +1.8
751,982 - Psyr_0663 0.49 -0.3
751,982 - Psyr_0663 0.49 -0.3
751,982 - Psyr_0663 0.49 +0.6
751,982 - Psyr_0663 0.49 -1.1
751,982 - Psyr_0663 0.49 +0.8
751,982 - Psyr_0663 0.49 -0.0
752,023 - Psyr_0663 0.53 +1.3
752,051 - Psyr_0663 0.56 +0.4
752,051 - Psyr_0663 0.56 +0.0
752,089 + Psyr_0663 0.59 -1.4
752,089 + Psyr_0663 0.59 +0.3
752,089 + Psyr_0663 0.59 +1.7
752,089 + Psyr_0663 0.59 -0.0
752,089 + Psyr_0663 0.59 +1.2
752,090 - Psyr_0663 0.59 -2.0
752,102 - Psyr_0663 0.60 +0.5
752,102 - Psyr_0663 0.60 +0.2
752,113 + Psyr_0663 0.61 +0.1
752,113 + Psyr_0663 0.61 +1.1
752,113 + Psyr_0663 0.61 -0.1
752,113 + Psyr_0663 0.61 +1.2
752,113 + Psyr_0663 0.61 -0.7
752,113 + Psyr_0663 0.61 -0.2
752,113 + Psyr_0663 0.61 -0.7
752,113 + Psyr_0663 0.61 +0.3
752,113 + Psyr_0663 0.61 +0.7
752,114 - Psyr_0663 0.62 -0.1
752,114 - Psyr_0663 0.62 +0.9
752,114 - Psyr_0663 0.62 +0.8
752,114 - Psyr_0663 0.62 -0.4
752,114 - Psyr_0663 0.62 +0.7
752,114 - Psyr_0663 0.62 -0.1
752,128 + Psyr_0663 0.63 -0.5
752,128 + Psyr_0663 0.63 -0.7
752,128 + Psyr_0663 0.63 +1.5
752,129 - Psyr_0663 0.63 +0.2
752,129 - Psyr_0663 0.63 -1.0
752,129 - Psyr_0663 0.63 +1.1
752,155 + Psyr_0663 0.65 +1.7
752,252 - Psyr_0663 0.74 -0.8
752,317 + Psyr_0663 0.80 +0.0
752,317 + Psyr_0663 0.80 -0.5
752,318 - Psyr_0663 0.80 -0.1
752,318 - Psyr_0663 0.80 -0.5
752,318 - Psyr_0663 0.80 +1.0
752,318 - Psyr_0663 0.80 +0.5
752,318 - Psyr_0663 0.80 -0.4
752,318 - Psyr_0663 0.80 -0.1
752,318 - Psyr_0663 0.80 +0.0
752,318 - Psyr_0663 0.80 -0.4
752,380 + Psyr_0663 0.86 -0.4
752,413 + Psyr_0663 0.89 +1.3
752,413 + Psyr_0663 0.89 -1.0
752,413 + Psyr_0663 0.89 +0.3
752,541 + +0.5
752,541 + -0.6
752,569 + -0.3
752,587 - +0.2
752,587 - +1.2
752,607 + -0.6
752,607 + +0.6
752,607 + +2.9
752,607 + +0.7
752,607 + -0.4
752,608 - -1.1
752,608 - +0.3
752,608 - +0.2
752,632 + +0.7
752,638 + +0.2
752,638 + -0.1
752,638 + +0.9
752,638 + +1.1
752,639 - -0.5
752,650 - -0.1
752,679 - -0.7
752,679 - -0.1
752,761 + +0.3
752,761 + +0.3
752,761 + -1.7
752,761 + +0.3
752,762 - -0.1
752,762 - +0.7
752,762 - +0.1
752,762 - -1.8
752,762 - +0.0
752,886 + +0.6
752,886 + +0.0
752,886 + +1.3
752,886 + -1.8
752,886 + -0.3
752,887 - -0.0
752,887 - +0.3
752,887 - +0.8
752,887 - -0.6
753,021 - Psyr_0664 0.27 +0.2
753,094 + Psyr_0664 0.36 -0.5
753,094 + Psyr_0664 0.36 -0.0
753,095 - Psyr_0664 0.36 +0.1
753,095 - Psyr_0664 0.36 -1.1
753,095 - Psyr_0664 0.36 +1.0
753,095 - Psyr_0664 0.36 -1.5
753,095 - Psyr_0664 0.36 +1.9
753,095 - Psyr_0664 0.36 +1.2
753,095 - Psyr_0664 0.36 -0.1
753,102 - Psyr_0664 0.37 +1.3
753,318 + Psyr_0664 0.64 -0.9
753,594 - +0.5
753,594 - +1.3
753,765 - Psyr_0665 0.17 -1.3
753,894 + Psyr_0665 0.30 +0.3
754,181 + Psyr_0665 0.60 +0.7
754,181 + Psyr_0665 0.60 -0.5
754,181 + Psyr_0665 0.60 +0.1
754,181 + Psyr_0665 0.60 -0.2
754,181 + Psyr_0665 0.60 +0.7
754,181 + Psyr_0665 0.60 +0.1
754,181 + Psyr_0665 0.60 +2.9
754,181 + Psyr_0665 0.60 -0.4
754,181 + Psyr_0665 0.60 -0.6
754,181 + Psyr_0665 0.60 +0.9
754,182 - Psyr_0665 0.60 -0.8
754,182 - Psyr_0665 0.60 +0.2
754,182 - Psyr_0665 0.60 +0.7
754,182 - Psyr_0665 0.60 -0.1
754,182 - Psyr_0665 0.60 +0.1
754,182 - Psyr_0665 0.60 -0.3
754,182 - Psyr_0665 0.60 -0.9
754,182 - Psyr_0665 0.60 -0.5
754,182 - Psyr_0665 0.60 +0.3
754,182 - Psyr_0665 0.60 +0.5
754,182 - Psyr_0665 0.60 +0.9
754,182 - Psyr_0665 0.60 -0.0
754,572 + -0.3
754,588 - -0.6

Or see this region's nucleotide sequence