Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0611

Experiment: KB with Khayasin C 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0610 and Psyr_0611 overlap by 4 nucleotidesPsyr_0611 and Psyr_0612 are separated by 66 nucleotidesPsyr_0612 and Psyr_0613 are separated by 1 nucleotides Psyr_0610: Psyr_0610 - ABC-2, at 700,534 to 701,310 _0610 Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011 _0611 Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 700.331 kb on + strandat 700.380 kb on + strandat 700.396 kb on - strandat 700.409 kb on - strandat 700.410 kb on + strandat 700.410 kb on + strandat 700.410 kb on + strandat 700.410 kb on + strandat 700.411 kb on - strandat 700.411 kb on - strandat 700.411 kb on - strandat 700.417 kb on - strandat 700.425 kb on - strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.461 kb on + strandat 700.461 kb on + strandat 700.461 kb on + strandat 700.461 kb on + strandat 700.462 kb on - strandat 700.518 kb on - strandat 700.521 kb on - strandat 700.534 kb on - strandat 700.615 kb on + strand, within Psyr_0610at 700.616 kb on - strand, within Psyr_0610at 700.616 kb on - strand, within Psyr_0610at 700.639 kb on - strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.679 kb on - strand, within Psyr_0610at 700.679 kb on - strand, within Psyr_0610at 700.682 kb on - strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.699 kb on - strand, within Psyr_0610at 700.699 kb on - strand, within Psyr_0610at 700.710 kb on + strand, within Psyr_0610at 700.711 kb on - strand, within Psyr_0610at 700.916 kb on + strand, within Psyr_0610at 700.916 kb on + strand, within Psyr_0610at 700.916 kb on + strand, within Psyr_0610at 700.917 kb on - strand, within Psyr_0610at 700.917 kb on - strand, within Psyr_0610at 700.917 kb on - strand, within Psyr_0610at 700.961 kb on - strand, within Psyr_0610at 701.070 kb on - strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.179 kb on - strand, within Psyr_0610at 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.452 kb on + strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.602 kb on + strand, within Psyr_0611at 701.642 kb on + strand, within Psyr_0611at 701.643 kb on - strand, within Psyr_0611at 701.757 kb on + strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.965 kb on - strandat 702.071 kb on + strandat 702.072 kb on - strandat 702.072 kb on - strandat 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.435 kb on + strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.687 kb on + strand, within Psyr_0612at 702.688 kb on - strand, within Psyr_0612at 702.688 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.727 kb on - strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strandat 702.888 kb on + strandat 702.888 kb on + strandat 702.889 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM
remove
700,331 + +0.8
700,380 + -0.0
700,396 - -0.6
700,409 - +1.1
700,410 + -0.4
700,410 + -1.8
700,410 + +0.6
700,410 + +1.5
700,411 - +0.9
700,411 - +0.3
700,411 - -0.5
700,417 - -0.8
700,425 - -0.0
700,437 + -1.8
700,437 + -1.0
700,437 + +3.4
700,437 + +0.9
700,438 - -1.2
700,438 - +1.4
700,438 - +2.9
700,438 - +1.0
700,438 - +0.6
700,438 - +1.0
700,461 + +0.2
700,461 + -0.2
700,461 + +0.7
700,461 + +0.2
700,462 - -0.3
700,518 - -0.2
700,521 - +0.4
700,534 - +0.6
700,615 + Psyr_0610 0.10 -1.2
700,616 - Psyr_0610 0.11 +0.6
700,616 - Psyr_0610 0.11 -0.3
700,639 - Psyr_0610 0.14 +0.6
700,678 + Psyr_0610 0.19 -0.6
700,678 + Psyr_0610 0.19 +0.4
700,678 + Psyr_0610 0.19 +0.4
700,679 - Psyr_0610 0.19 +0.7
700,679 - Psyr_0610 0.19 +0.8
700,682 - Psyr_0610 0.19 +1.0
700,696 + Psyr_0610 0.21 +0.5
700,696 + Psyr_0610 0.21 +0.7
700,696 + Psyr_0610 0.21 +0.1
700,696 + Psyr_0610 0.21 -1.0
700,696 + Psyr_0610 0.21 +0.3
700,696 + Psyr_0610 0.21 -0.6
700,696 + Psyr_0610 0.21 -1.0
700,697 - Psyr_0610 0.21 +0.2
700,697 - Psyr_0610 0.21 +0.9
700,697 - Psyr_0610 0.21 +0.4
700,697 - Psyr_0610 0.21 -1.3
700,699 - Psyr_0610 0.21 +0.7
700,699 - Psyr_0610 0.21 +0.4
700,710 + Psyr_0610 0.23 -2.2
700,711 - Psyr_0610 0.23 +0.9
700,916 + Psyr_0610 0.49 -0.4
700,916 + Psyr_0610 0.49 -0.0
700,916 + Psyr_0610 0.49 -1.5
700,917 - Psyr_0610 0.49 +0.6
700,917 - Psyr_0610 0.49 +0.1
700,917 - Psyr_0610 0.49 -0.7
700,961 - Psyr_0610 0.55 -1.5
701,070 - Psyr_0610 0.69 -0.2
701,099 + Psyr_0610 0.73 +0.0
701,099 + Psyr_0610 0.73 +0.5
701,099 + Psyr_0610 0.73 -2.3
701,099 + Psyr_0610 0.73 +1.1
701,099 + Psyr_0610 0.73 +0.2
701,099 + Psyr_0610 0.73 -1.4
701,099 + Psyr_0610 0.73 -0.6
701,099 + Psyr_0610 0.73 -1.9
701,100 - Psyr_0610 0.73 +0.4
701,100 - Psyr_0610 0.73 -1.0
701,100 - Psyr_0610 0.73 +0.9
701,100 - Psyr_0610 0.73 -0.0
701,146 + Psyr_0610 0.79 -0.6
701,146 + Psyr_0610 0.79 -0.5
701,146 + Psyr_0610 0.79 -0.5
701,146 + Psyr_0610 0.79 -0.9
701,147 - Psyr_0610 0.79 +0.6
701,147 - Psyr_0610 0.79 -0.5
701,147 - Psyr_0610 0.79 +0.4
701,147 - Psyr_0610 0.79 +0.6
701,164 + Psyr_0610 0.81 -0.7
701,165 - Psyr_0610 0.81 +0.8
701,165 - Psyr_0610 0.81 -0.8
701,179 - Psyr_0610 0.83 -0.3
701,302 + -0.1
701,302 + -0.6
701,302 + -1.3
701,303 - +0.7
701,303 - -0.6
701,303 - +0.8
701,303 - -1.2
701,303 - +0.0
701,303 - +0.4
701,303 - +2.8
701,306 + +0.6
701,306 + -1.6
701,306 + +1.1
701,307 - +0.4
701,307 - +0.1
701,307 - -0.5
701,307 - -0.9
701,452 + Psyr_0611 0.21 +0.4
701,453 - Psyr_0611 0.21 -0.6
701,453 - Psyr_0611 0.21 +1.1
701,453 - Psyr_0611 0.21 +0.7
701,453 - Psyr_0611 0.21 +0.2
701,453 - Psyr_0611 0.21 +0.4
701,516 + Psyr_0611 0.30 -0.6
701,516 + Psyr_0611 0.30 -0.6
701,517 - Psyr_0611 0.30 +0.4
701,517 - Psyr_0611 0.30 -0.3
701,517 - Psyr_0611 0.30 -0.6
701,517 - Psyr_0611 0.30 -1.0
701,517 - Psyr_0611 0.30 -1.5
701,602 + Psyr_0611 0.42 -1.5
701,642 + Psyr_0611 0.48 +0.2
701,643 - Psyr_0611 0.48 -2.0
701,757 + Psyr_0611 0.64 +1.8
701,773 - Psyr_0611 0.66 -1.0
701,773 - Psyr_0611 0.66 -1.8
701,773 - Psyr_0611 0.66 +0.8
701,773 - Psyr_0611 0.66 -1.5
701,773 - Psyr_0611 0.66 -0.1
701,773 - Psyr_0611 0.66 -1.6
701,965 - +0.6
702,071 + -0.2
702,072 - +0.2
702,072 - +0.2
702,163 + Psyr_0612 0.11 -0.1
702,163 + Psyr_0612 0.11 +0.5
702,163 + Psyr_0612 0.11 +0.5
702,163 + Psyr_0612 0.11 +1.4
702,163 + Psyr_0612 0.11 -1.0
702,163 + Psyr_0612 0.11 -0.9
702,164 - Psyr_0612 0.11 +0.0
702,164 - Psyr_0612 0.11 -0.2
702,164 - Psyr_0612 0.11 -0.2
702,164 - Psyr_0612 0.11 -0.6
702,233 + Psyr_0612 0.20 +0.5
702,233 + Psyr_0612 0.20 +0.5
702,233 + Psyr_0612 0.20 -0.1
702,233 + Psyr_0612 0.20 -0.2
702,234 - Psyr_0612 0.20 +1.0
702,234 - Psyr_0612 0.20 +0.8
702,351 + Psyr_0612 0.36 +0.4
702,351 + Psyr_0612 0.36 +0.9
702,351 + Psyr_0612 0.36 -1.2
702,351 + Psyr_0612 0.36 +1.5
702,352 - Psyr_0612 0.36 -0.8
702,352 - Psyr_0612 0.36 +0.2
702,352 - Psyr_0612 0.36 -0.4
702,352 - Psyr_0612 0.36 -0.5
702,352 - Psyr_0612 0.36 -0.5
702,425 + Psyr_0612 0.46 -2.1
702,425 + Psyr_0612 0.46 -0.0
702,425 + Psyr_0612 0.46 +0.5
702,426 - Psyr_0612 0.46 +0.5
702,426 - Psyr_0612 0.46 -0.8
702,427 + Psyr_0612 0.46 -0.1
702,427 + Psyr_0612 0.46 +2.6
702,427 + Psyr_0612 0.46 +0.3
702,427 + Psyr_0612 0.46 +1.6
702,427 + Psyr_0612 0.46 -1.3
702,427 + Psyr_0612 0.46 +0.8
702,427 + Psyr_0612 0.46 -0.1
702,428 - Psyr_0612 0.46 -0.9
702,428 - Psyr_0612 0.46 -2.2
702,428 - Psyr_0612 0.46 -0.1
702,428 - Psyr_0612 0.46 -0.1
702,428 - Psyr_0612 0.46 -0.2
702,428 - Psyr_0612 0.46 -0.6
702,428 - Psyr_0612 0.46 -1.1
702,428 - Psyr_0612 0.46 -1.0
702,428 - Psyr_0612 0.46 +0.8
702,428 - Psyr_0612 0.46 -1.2
702,435 + Psyr_0612 0.47 +1.2
702,563 + Psyr_0612 0.64 -0.2
702,563 + Psyr_0612 0.64 +0.4
702,591 + Psyr_0612 0.67 +0.6
702,591 + Psyr_0612 0.67 -1.0
702,591 + Psyr_0612 0.67 -0.4
702,591 + Psyr_0612 0.67 +0.7
702,591 + Psyr_0612 0.67 -0.4
702,591 + Psyr_0612 0.67 +0.5
702,591 + Psyr_0612 0.67 -2.2
702,592 - Psyr_0612 0.67 -0.2
702,592 - Psyr_0612 0.67 -1.2
702,592 - Psyr_0612 0.67 -1.4
702,592 - Psyr_0612 0.67 +0.2
702,592 - Psyr_0612 0.67 -1.3
702,592 - Psyr_0612 0.67 -0.8
702,592 - Psyr_0612 0.67 -2.6
702,594 - Psyr_0612 0.68 -0.0
702,594 - Psyr_0612 0.68 +0.9
702,672 + Psyr_0612 0.78 -0.1
702,672 + Psyr_0612 0.78 -0.0
702,673 - Psyr_0612 0.78 -0.6
702,673 - Psyr_0612 0.78 +0.2
702,673 - Psyr_0612 0.78 -0.8
702,687 + Psyr_0612 0.80 -0.1
702,688 - Psyr_0612 0.80 +0.8
702,688 - Psyr_0612 0.80 +0.7
702,726 + Psyr_0612 0.85 +1.1
702,727 - Psyr_0612 0.85 +0.8
702,756 + Psyr_0612 0.89 +0.2
702,756 + Psyr_0612 0.89 -0.6
702,756 + Psyr_0612 0.89 -1.5
702,756 + Psyr_0612 0.89 -1.1
702,756 + Psyr_0612 0.89 +0.9
702,756 + Psyr_0612 0.89 -0.7
702,756 + Psyr_0612 0.89 +0.1
702,757 - Psyr_0612 0.89 +0.4
702,757 - Psyr_0612 0.89 +0.0
702,757 - Psyr_0612 0.89 -0.6
702,757 - Psyr_0612 0.89 -1.8
702,757 - Psyr_0612 0.89 -1.0
702,757 - Psyr_0612 0.89 -0.1
702,757 - Psyr_0612 0.89 -2.2
702,757 - Psyr_0612 0.89 +2.0
702,757 - Psyr_0612 0.89 -0.6
702,757 - Psyr_0612 0.89 +0.4
702,757 - Psyr_0612 0.89 -1.2
702,888 + +0.5
702,888 + +0.0
702,888 + +0.2
702,889 - +0.7

Or see this region's nucleotide sequence