Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0492

Experiment: KB with Khayasin C 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0491 and Psyr_0492 are separated by 47 nucleotidesPsyr_0492 and Psyr_0493 overlap by 8 nucleotidesPsyr_0493 and Psyr_0494 are separated by 121 nucleotides Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943 _0491 Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969 _0492 Psyr_0493: Psyr_0493 - CheW-like protein, at 534,962 to 535,432 _0493 Psyr_0494: Psyr_0494 - Protein of unknown function UPF0061, at 535,554 to 537,017 _0494 Position (kb) 528 529 530 531 532 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 528.056 kb on + strand, within Psyr_0491at 528.056 kb on + strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.742 kb on + strandat 528.742 kb on + strandat 528.742 kb on + strandat 528.742 kb on + strandat 528.743 kb on - strandat 528.946 kb on + strandat 528.946 kb on + strandat 528.947 kb on - strandat 528.947 kb on - strandat 529.009 kb on + strandat 529.009 kb on + strandat 529.009 kb on + strandat 529.010 kb on - strandat 529.010 kb on - strandat 529.013 kb on + strandat 529.013 kb on + strandat 529.013 kb on + strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.171 kb on + strandat 529.171 kb on + strandat 529.171 kb on + strandat 529.172 kb on - strandat 529.295 kb on - strandat 529.565 kb on - strandat 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.855 kb on + strand, within Psyr_0492at 529.855 kb on + strand, within Psyr_0492at 530.203 kb on + strand, within Psyr_0492at 530.203 kb on + strand, within Psyr_0492at 530.203 kb on + strand, within Psyr_0492at 530.204 kb on - strand, within Psyr_0492at 530.359 kb on + strand, within Psyr_0492at 530.359 kb on + strand, within Psyr_0492at 530.485 kb on + strand, within Psyr_0492at 530.485 kb on + strand, within Psyr_0492at 530.486 kb on - strand, within Psyr_0492at 530.486 kb on - strand, within Psyr_0492at 530.572 kb on + strand, within Psyr_0492at 530.573 kb on - strand, within Psyr_0492at 530.573 kb on - strand, within Psyr_0492at 530.575 kb on + strand, within Psyr_0492at 530.576 kb on - strand, within Psyr_0492at 530.661 kb on + strand, within Psyr_0492at 530.661 kb on + strand, within Psyr_0492at 530.661 kb on + strand, within Psyr_0492at 530.662 kb on - strand, within Psyr_0492at 530.770 kb on - strand, within Psyr_0492at 530.770 kb on - strand, within Psyr_0492at 530.770 kb on - strand, within Psyr_0492at 530.932 kb on + strand, within Psyr_0492at 531.456 kb on + strand, within Psyr_0492at 531.457 kb on - strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.538 kb on + strand, within Psyr_0492at 531.539 kb on - strand, within Psyr_0492at 531.539 kb on - strand, within Psyr_0492at 531.539 kb on - strand, within Psyr_0492at 531.539 kb on - strand, within Psyr_0492at 531.955 kb on + strand, within Psyr_0492at 531.955 kb on + strand, within Psyr_0492at 531.955 kb on + strand, within Psyr_0492at 531.956 kb on - strand, within Psyr_0492at 532.167 kb on + strand, within Psyr_0492at 532.167 kb on + strand, within Psyr_0492at 532.167 kb on + strand, within Psyr_0492at 532.167 kb on + strand, within Psyr_0492at 532.167 kb on + strand, within Psyr_0492at 532.168 kb on - strand, within Psyr_0492at 532.265 kb on + strand, within Psyr_0492at 532.266 kb on - strand, within Psyr_0492at 532.549 kb on + strand, within Psyr_0492at 533.226 kb on + strand, within Psyr_0492at 533.227 kb on - strand, within Psyr_0492at 533.800 kb on - strand, within Psyr_0492at 533.818 kb on + strand, within Psyr_0492at 533.818 kb on + strand, within Psyr_0492at 533.818 kb on + strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 533.819 kb on - strand, within Psyr_0492at 534.166 kb on + strand, within Psyr_0492at 534.167 kb on - strand, within Psyr_0492at 534.183 kb on + strand, within Psyr_0492at 534.229 kb on + strand, within Psyr_0492at 534.259 kb on + strand, within Psyr_0492at 534.645 kb on + strandat 534.898 kb on + strandat 534.899 kb on - strandat 535.115 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.314 kb on - strand, within Psyr_0493at 535.314 kb on - strand, within Psyr_0493at 535.430 kb on + strandat 535.430 kb on + strandat 535.430 kb on + strandat 535.431 kb on - strandat 535.435 kb on - strandat 535.486 kb on + strandat 535.486 kb on + strandat 535.486 kb on + strandat 535.487 kb on - strandat 535.490 kb on + strandat 535.540 kb on - strandat 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.721 kb on - strand, within Psyr_0494at 535.721 kb on - strand, within Psyr_0494at 535.735 kb on + strand, within Psyr_0494at 535.736 kb on - strand, within Psyr_0494at 535.736 kb on - strand, within Psyr_0494at 535.802 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.922 kb on - strand, within Psyr_0494

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Khayasin C 10 mM
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528,056 + Psyr_0491 0.57 +0.3
528,056 + Psyr_0491 0.57 +0.9
528,057 - Psyr_0491 0.57 +0.8
528,057 - Psyr_0491 0.57 +0.1
528,057 - Psyr_0491 0.57 -2.1
528,742 + -0.2
528,742 + +1.0
528,742 + -0.6
528,742 + -0.2
528,743 - +1.0
528,946 + +0.0
528,946 + -0.5
528,947 - -2.6
528,947 - +0.4
529,009 + +0.1
529,009 + +2.1
529,009 + +0.0
529,010 - -1.2
529,010 - +0.9
529,013 + +2.2
529,013 + -1.6
529,013 + -0.3
529,014 - -0.5
529,014 - -0.3
529,014 - -0.3
529,014 - +0.4
529,171 + +0.7
529,171 + +0.5
529,171 + +0.2
529,172 - -0.2
529,295 - -1.6
529,565 - +1.4
529,801 + Psyr_0492 0.14 -2.9
529,801 + Psyr_0492 0.14 -0.5
529,801 + Psyr_0492 0.14 -0.7
529,801 + Psyr_0492 0.14 -1.1
529,801 + Psyr_0492 0.14 -0.2
529,801 + Psyr_0492 0.14 -0.4
529,801 + Psyr_0492 0.14 -0.0
529,801 + Psyr_0492 0.14 -1.2
529,801 + Psyr_0492 0.14 +0.1
529,801 + Psyr_0492 0.14 -0.8
529,801 + Psyr_0492 0.14 -1.1
529,801 + Psyr_0492 0.14 -0.3
529,802 - Psyr_0492 0.14 -0.5
529,802 - Psyr_0492 0.14 -0.5
529,802 - Psyr_0492 0.14 -1.1
529,802 - Psyr_0492 0.14 -1.4
529,802 - Psyr_0492 0.14 +0.6
529,855 + Psyr_0492 0.14 -0.9
529,855 + Psyr_0492 0.14 -1.0
530,203 + Psyr_0492 0.20 -0.7
530,203 + Psyr_0492 0.20 -0.5
530,203 + Psyr_0492 0.20 -0.6
530,204 - Psyr_0492 0.20 -0.9
530,359 + Psyr_0492 0.23 +0.1
530,359 + Psyr_0492 0.23 +0.2
530,485 + Psyr_0492 0.25 -1.6
530,485 + Psyr_0492 0.25 -0.9
530,486 - Psyr_0492 0.25 -0.6
530,486 - Psyr_0492 0.25 -1.1
530,572 + Psyr_0492 0.26 -1.2
530,573 - Psyr_0492 0.26 -1.2
530,573 - Psyr_0492 0.26 -0.6
530,575 + Psyr_0492 0.26 -0.2
530,576 - Psyr_0492 0.27 +1.4
530,661 + Psyr_0492 0.28 -0.7
530,661 + Psyr_0492 0.28 -1.9
530,661 + Psyr_0492 0.28 -0.7
530,662 - Psyr_0492 0.28 +0.1
530,770 - Psyr_0492 0.30 +0.7
530,770 - Psyr_0492 0.30 +0.8
530,770 - Psyr_0492 0.30 -1.2
530,932 + Psyr_0492 0.32 -2.8
531,456 + Psyr_0492 0.41 +0.5
531,457 - Psyr_0492 0.41 -1.1
531,538 + Psyr_0492 0.43 -0.7
531,538 + Psyr_0492 0.43 -1.2
531,538 + Psyr_0492 0.43 -1.3
531,538 + Psyr_0492 0.43 -0.6
531,538 + Psyr_0492 0.43 +0.7
531,538 + Psyr_0492 0.43 -1.3
531,539 - Psyr_0492 0.43 +0.7
531,539 - Psyr_0492 0.43 +0.0
531,539 - Psyr_0492 0.43 -0.8
531,539 - Psyr_0492 0.43 +1.4
531,955 + Psyr_0492 0.50 -0.4
531,955 + Psyr_0492 0.50 -1.5
531,955 + Psyr_0492 0.50 +1.0
531,956 - Psyr_0492 0.50 -0.0
532,167 + Psyr_0492 0.53 -0.1
532,167 + Psyr_0492 0.53 +0.7
532,167 + Psyr_0492 0.53 -0.7
532,167 + Psyr_0492 0.53 -1.9
532,167 + Psyr_0492 0.53 -0.2
532,168 - Psyr_0492 0.53 -0.4
532,265 + Psyr_0492 0.55 -1.6
532,266 - Psyr_0492 0.55 -1.7
532,549 + Psyr_0492 0.60 -1.2
533,226 + Psyr_0492 0.71 -0.0
533,227 - Psyr_0492 0.71 -3.5
533,800 - Psyr_0492 0.80 -0.2
533,818 + Psyr_0492 0.81 +0.4
533,818 + Psyr_0492 0.81 -0.3
533,818 + Psyr_0492 0.81 +1.5
533,819 - Psyr_0492 0.81 -1.3
533,819 - Psyr_0492 0.81 -0.0
533,819 - Psyr_0492 0.81 -0.2
533,819 - Psyr_0492 0.81 -0.2
533,819 - Psyr_0492 0.81 -1.7
533,819 - Psyr_0492 0.81 -0.8
534,166 + Psyr_0492 0.87 +0.3
534,167 - Psyr_0492 0.87 -0.9
534,183 + Psyr_0492 0.87 -1.4
534,229 + Psyr_0492 0.88 -0.7
534,259 + Psyr_0492 0.88 -0.7
534,645 + -0.7
534,898 + -0.8
534,899 - -0.0
535,115 + Psyr_0493 0.32 +1.4
535,313 + Psyr_0493 0.75 -1.5
535,313 + Psyr_0493 0.75 -1.5
535,313 + Psyr_0493 0.75 -1.6
535,314 - Psyr_0493 0.75 -0.9
535,314 - Psyr_0493 0.75 -0.1
535,430 + -1.1
535,430 + +0.6
535,430 + -0.2
535,431 - +0.5
535,435 - -0.6
535,486 + +0.8
535,486 + -0.1
535,486 + -0.4
535,487 - -0.2
535,490 + +0.7
535,540 - +0.3
535,720 + Psyr_0494 0.11 +1.4
535,720 + Psyr_0494 0.11 +0.4
535,720 + Psyr_0494 0.11 +0.2
535,720 + Psyr_0494 0.11 -1.7
535,720 + Psyr_0494 0.11 +1.0
535,720 + Psyr_0494 0.11 -1.2
535,721 - Psyr_0494 0.11 +0.4
535,721 - Psyr_0494 0.11 -1.4
535,735 + Psyr_0494 0.12 -0.6
535,736 - Psyr_0494 0.12 -0.0
535,736 - Psyr_0494 0.12 +0.4
535,802 + Psyr_0494 0.17 -0.9
535,921 + Psyr_0494 0.25 +1.2
535,921 + Psyr_0494 0.25 +1.3
535,921 + Psyr_0494 0.25 -0.2
535,921 + Psyr_0494 0.25 +0.5
535,922 - Psyr_0494 0.25 +0.5

Or see this region's nucleotide sequence