Experiment: nitrogen source Ammonium chloride 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5751 and Pf1N1B4_5752 are separated by 154 nucleotides Pf1N1B4_5752 and Pf1N1B4_5753 are separated by 75 nucleotides Pf1N1B4_5753 and Pf1N1B4_5754 are separated by 28 nucleotides Pf1N1B4_5754 and Pf1N1B4_5755 overlap by 7 nucleotides
Pf1N1B4_5751 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 191,511 to 193,040
_5751
Pf1N1B4_5752 - Nitric oxide-dependent regulator DnrN or NorA, at 193,195 to 193,869
_5752
Pf1N1B4_5753 - putative membrane protein, at 193,945 to 194,382
_5753
Pf1N1B4_5754 - NnrS protein involved in response to NO, at 194,411 to 195,073
_5754
Pf1N1B4_5755 - NnrS protein involved in response to NO, at 195,067 to 195,600
_5755
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.952 kb on + strand at 192.953 kb on - strand at 193.044 kb on - strand at 193.044 kb on - strand at 193.047 kb on - strand at 193.047 kb on - strand at 193.058 kb on - strand at 193.755 kb on + strand, within Pf1N1B4_5752 at 193.942 kb on + strand at 194.079 kb on - strand, within Pf1N1B4_5753 at 194.079 kb on - strand, within Pf1N1B4_5753 at 194.199 kb on - strand, within Pf1N1B4_5753 at 194.272 kb on + strand at 194.470 kb on - strand at 194.911 kb on - strand, within Pf1N1B4_5754 at 194.912 kb on + strand, within Pf1N1B4_5754 at 194.913 kb on - strand, within Pf1N1B4_5754 at 195.171 kb on + strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM remove 192,952 + +0.2 192,953 - -0.2 193,044 - +0.1 193,044 - +1.9 193,047 - +0.9 193,047 - -0.6 193,058 - -1.3 193,755 + Pf1N1B4_5752 0.83 +1.1 193,942 + -0.6 194,079 - Pf1N1B4_5753 0.31 -0.9 194,079 - Pf1N1B4_5753 0.31 -0.3 194,199 - Pf1N1B4_5753 0.58 -2.9 194,272 + +2.1 194,470 - -1.4 194,911 - Pf1N1B4_5754 0.75 -0.9 194,912 + Pf1N1B4_5754 0.76 +0.4 194,913 - Pf1N1B4_5754 0.76 -1.0 195,171 + Pf1N1B4_5755 0.19 -2.2 195,172 - Pf1N1B4_5755 0.20 -1.1 195,172 - Pf1N1B4_5755 0.20 +0.8 195,172 - Pf1N1B4_5755 0.20 -1.8 195,172 - Pf1N1B4_5755 0.20 +1.7
Or see this region's nucleotide sequence