Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1162

Experiment: nitrogen source Ammonium chloride 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1161 and Pf1N1B4_1162 are separated by 27 nucleotidesPf1N1B4_1162 and Pf1N1B4_1163 are separated by 47 nucleotidesPf1N1B4_1163 and Pf1N1B4_5176 are separated by 141 nucleotidesPf1N1B4_5176 and Pf1N1B4_5177 are separated by 99 nucleotides Pf1N1B4_1161 - Translation initiation factor 2, at 1,307,495 to 1,310,020 _1161 Pf1N1B4_1162 - Transcription termination protein NusA, at 1,310,048 to 1,311,529 _1162 Pf1N1B4_1163 - FIG000325: clustered with transcription termination protein NusA, at 1,311,577 to 1,312,035 _1163 Pf1N1B4_5176 - tRNA-Met-CAT, at 1,312,177 to 1,312,250 _5176 Pf1N1B4_5177 - tRNA-Leu-GAG, at 1,312,350 to 1,312,432 _5177 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -2 -1 0 1 2at 1310.046 kb on - strandat 1310.046 kb on - strandat 1310.050 kb on - strandat 1310.050 kb on - strandat 1310.166 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.299 kb on - strandat 1312.299 kb on - strandat 1312.311 kb on - strandat 1312.311 kb on - strandat 1312.344 kb on - strandat 1312.436 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM
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1,310,046 - +1.0
1,310,046 - +0.4
1,310,050 - +0.3
1,310,050 - +1.8
1,310,166 - +1.6
1,312,056 - -2.1
1,312,056 - -0.0
1,312,056 - +0.3
1,312,056 - +0.3
1,312,056 - -1.5
1,312,056 - +0.2
1,312,299 - +0.5
1,312,299 - -0.6
1,312,311 - -1.0
1,312,311 - +0.7
1,312,344 - -0.5
1,312,436 - -0.9
1,312,439 - +0.4
1,312,439 - -0.5
1,312,439 - +0.9
1,312,439 - +1.0
1,312,457 - -0.2
1,312,457 - +0.2
1,312,457 - -1.7
1,312,457 - +0.8

Or see this region's nucleotide sequence