Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4238

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
5,580,413	-				-3.0
5,580,416	+				-1.9
5,580,416	+				+0.6
5,580,417	-				-1.0
5,580,417	-				-0.2
5,580,417	-				+0.6
5,580,482	-				-1.9
5,580,799	+		BT4237	0.40	-0.4
5,580,801	+		BT4237	0.41	-1.7
5,580,802	-		BT4237	0.41	+0.5
5,580,805	+		BT4237	0.41	-0.5
5,580,808	+		BT4237	0.41	-1.4
5,580,817	-		BT4237	0.43	+1.0
5,580,860	-		BT4237	0.48	-3.4
5,580,875	-		BT4237	0.50	-3.1
5,580,946	-		BT4237	0.59	-1.5
5,580,953	+		BT4237	0.59	-1.2
5,581,026	+		BT4237	0.68	+0.6
5,581,027	-		BT4237	0.69	+0.1
5,581,133	+		BT4237	0.82	-1.9
5,581,248	-				+0.6
5,581,248	-				-1.4
5,581,251	+				-1.2
5,581,280	-				-0.9
5,581,280	-				-1.4
5,581,312	+				-1.7
5,581,313	-				-0.4
5,581,331	-				-2.3
5,581,331	-				-0.4
5,581,354	-				-1.7
5,581,399	-				-2.2
5,581,399	-				-0.4
5,581,535	-		BT4238	0.21	-2.2
5,581,568	+		BT4238	0.25	-2.2
5,581,568	+		BT4238	0.25	-1.4
5,581,569	-		BT4238	0.25	-2.9
5,581,569	-		BT4238	0.25	-0.2
5,581,573	+		BT4238	0.25	-3.6
5,581,589	-		BT4238	0.27	-1.8
5,581,642	+		BT4238	0.33	+0.1
5,581,689	+		BT4238	0.38	-1.2
5,581,690	-		BT4238	0.38	-0.4
5,581,728	-		BT4238	0.42	-0.9
5,581,832	-		BT4238	0.54	+0.6
5,581,871	+		BT4238	0.58	-1.8
5,581,871	+		BT4238	0.58	-1.0
5,581,924	+		BT4238	0.64	-2.5
5,581,924	+		BT4238	0.64	-1.9
5,581,925	-		BT4238	0.64	-3.1
5,582,198	-				-1.4
5,582,226	+				-0.2
5,582,227	-				-1.9
5,582,280	-				+0.6
5,582,280	-				-0.6
5,582,280	-				-1.2
5,582,351	+		BT4239	0.15	-0.7
5,582,493	+		BT4239	0.36	-2.8
5,582,539	+		BT4239	0.43	-2.3
5,582,556	-		BT4239	0.46	-0.1
5,582,582	+		BT4239	0.50	+0.0
5,582,622	+		BT4239	0.56	+0.3
5,582,625	-		BT4239	0.57	+1.5
5,582,715	+		BT4239	0.71	+0.4
5,582,752	+		BT4239	0.76	-1.9
5,582,753	-		BT4239	0.76	-1.2
5,582,753	-		BT4239	0.76	-1.6
5,582,783	+		BT4239	0.81	+1.8
5,582,817	+		BT4239	0.86	-0.4
5,582,819	+		BT4239	0.86	+0.1
5,582,819	+		BT4239	0.86	+0.8
5,582,820	-		BT4239	0.87	-1.4
5,582,875	-				-0.2
5,582,928	+				-2.0
5,583,000	-				-1.7
5,583,054	-				+1.1
5,583,054	-				-1.4
5,583,064	+		BT4240	0.10	-0.3
5,583,076	+		BT4240	0.11	+1.1
5,583,079	+		BT4240	0.12	-0.9
5,583,096	-		BT4240	0.13	+0.1
5,583,098	-		BT4240	0.13	-1.9
5,583,126	-		BT4240	0.16	-1.2
5,583,148	+		BT4240	0.18	+0.3
5,583,162	+		BT4240	0.19	-2.4