Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3632

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
4,703,972	+		BT3631	0.35	-0.5
4,704,082	+		BT3631	0.42	+0.2
4,704,276	+		BT3631	0.55	-2.1
4,704,286	-		BT3631	0.55	-0.6
4,704,286	-		BT3631	0.55	-2.2
4,704,316	-		BT3631	0.57	-1.0
4,704,397	-		BT3631	0.63	-0.7
4,704,454	+		BT3631	0.67	-0.0
4,704,454	+		BT3631	0.67	-0.6
4,704,454	+		BT3631	0.67	-0.7
4,704,543	-		BT3631	0.72	+2.3
4,704,544	+		BT3631	0.72	-0.1
4,704,545	-		BT3631	0.73	-1.9
4,704,562	-		BT3631	0.74	-1.7
4,704,756	+		BT3631	0.87	+0.6
4,704,756	+		BT3631	0.87	-1.7
4,704,757	-		BT3631	0.87	-0.8
4,704,912	-				+0.5
4,704,913	+				-0.1
4,704,925	+				+0.6
4,704,925	+				-4.3
4,704,925	+				-0.0
4,704,925	+				-0.7
4,704,936	+				-0.0
4,704,936	+				+0.5
4,704,936	+				+1.9
4,704,937	-				+0.6
4,704,937	-				+0.4
4,704,953	-				-1.4
4,704,953	-				-0.8
4,705,102	+		BT3632	0.12	-0.3
4,705,156	+		BT3632	0.17	-3.3
4,705,258	+		BT3632	0.25	-1.0
4,705,258	+		BT3632	0.25	-1.0
4,705,259	-		BT3632	0.25	-0.1
4,705,322	+		BT3632	0.30	-3.0
4,705,323	-		BT3632	0.30	+1.3
4,705,323	-		BT3632	0.30	-0.1
4,705,402	+		BT3632	0.36	-3.0
4,705,433	-		BT3632	0.39	-2.0
4,705,587	-		BT3632	0.51	-1.2
4,705,587	-		BT3632	0.51	-0.7
4,705,641	+		BT3632	0.56	-0.3
4,705,676	+		BT3632	0.59	+0.7
4,705,677	-		BT3632	0.59	-1.7
4,705,735	+		BT3632	0.63	-0.3
4,705,740	-		BT3632	0.64	+0.7
4,705,740	-		BT3632	0.64	-0.3
4,705,751	-		BT3632	0.65	-0.7
4,705,751	-		BT3632	0.65	+0.3
4,705,830	-		BT3632	0.71	-1.3
4,705,848	+		BT3632	0.73	-0.3
4,705,896	-		BT3632	0.76	-0.7
4,705,896	-		BT3632	0.76	-1.7
4,705,924	-		BT3632	0.79	-2.0
4,705,930	+		BT3632	0.79	-1.3
4,705,930	+		BT3632	0.79	-1.8
4,706,140	-				-1.9
4,706,165	+				-1.2
4,706,165	+				-0.7
4,706,167	+				-0.9
4,706,193	-				-0.5
4,706,219	+				-2.9
4,706,262	-				-0.3
4,706,274	-				-0.3
4,706,372	+				+0.1
4,706,409	+				-0.9
4,706,409	+				-3.2
4,706,576	+		BT3633	0.14	-2.4
4,706,583	+		BT3633	0.14	+0.5
4,706,750	+		BT3633	0.20	-1.9
4,706,750	+		BT3633	0.20	+0.2
4,706,750	+		BT3633	0.20	-2.3
4,706,751	-		BT3633	0.20	-1.5
4,706,751	-		BT3633	0.20	-0.6
4,706,753	-		BT3633	0.20	-1.7
4,706,753	-		BT3633	0.20	-1.5
4,706,754	+		BT3633	0.20	-1.8
4,706,754	+		BT3633	0.20	-2.1
4,706,758	+		BT3633	0.20	+0.1
4,706,758	+		BT3633	0.20	+0.1
4,706,758	+		BT3633	0.20	-0.9
4,706,758	+		BT3633	0.20	-2.0
4,706,759	-		BT3633	0.20	-1.5
4,706,768	+		BT3633	0.20	+0.1
4,706,816	+		BT3633	0.22	-0.6
4,706,837	+		BT3633	0.23	+0.3
4,706,847	-		BT3633	0.23	+1.3
4,706,851	-		BT3633	0.23	-3.7
4,707,028	+		BT3633	0.29	-3.2
4,707,028	+		BT3633	0.29	-1.2
4,707,028	+		BT3633	0.29	+0.3
4,707,029	-		BT3633	0.30	-0.5
4,707,030	+		BT3633	0.30	-1.7
4,707,030	+		BT3633	0.30	-2.2
4,707,030	+		BT3633	0.30	-2.9
4,707,031	-		BT3633	0.30	-0.4
4,707,031	-		BT3633	0.30	+0.2
4,707,128	+		BT3633	0.33	-0.2
4,707,128	+		BT3633	0.33	-1.5
4,707,129	-		BT3633	0.33	-2.3
4,707,129	-		BT3633	0.33	-0.7
4,707,138	+		BT3633	0.33	-1.0
4,707,144	+		BT3633	0.34	-2.5
4,707,171	-		BT3633	0.35	+1.3
4,707,175	+		BT3633	0.35	-0.6