Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2582

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
3,224,836	-				-1.2
3,224,840	+				+1.0
3,224,864	+				-0.4
3,224,880	-				-1.2
3,224,882	+				-2.5
3,224,892	+				-1.0
3,224,893	-				-0.1
3,224,893	-				-2.8
3,224,901	-				-0.6
3,224,901	-				-2.2
3,224,910	-				-0.1
3,224,911	+				-0.6
3,224,963	+		BT2580	0.14	+0.3
3,224,964	-		BT2580	0.14	-3.7
3,224,997	+		BT2580	0.29	+0.1
3,224,998	-		BT2580	0.30	-0.5
3,225,022	+		BT2580	0.41	+1.0
3,225,154	-				-0.9
3,225,187	+				-2.3
3,225,207	+				-1.2
3,225,208	-				-1.2
3,225,254	-				+0.6
3,225,395	+		BT2581	0.36	-1.2
3,225,395	+		BT2581	0.36	-4.0
3,225,396	-		BT2581	0.36	-0.2
3,225,396	-		BT2581	0.36	+0.4
3,225,396	-		BT2581	0.36	-1.6
3,225,399	+		BT2581	0.37	-0.6
3,225,399	+		BT2581	0.37	-1.8
3,225,400	-		BT2581	0.37	-2.1
3,225,400	-		BT2581	0.37	-0.2
3,225,400	-		BT2581	0.37	-1.7
3,225,401	+		BT2581	0.37	+0.4
3,225,402	-		BT2581	0.38	+0.3
3,225,405	+		BT2581	0.38	-1.2
3,225,405	+		BT2581	0.38	-0.6
3,225,405	+		BT2581	0.38	-0.0
3,225,405	+		BT2581	0.38	+0.4
3,225,406	-		BT2581	0.38	+0.8
3,225,406	-		BT2581	0.38	-0.9
3,225,408	-				+0.4
3,225,413	+		BT2581	0.40	+0.0
3,225,418	-		BT2581	0.41	+0.2
3,225,535	-		BT2581	0.64	-0.2
3,225,535	-		BT2581	0.64	+1.0
3,225,970	-		BT2582	0.27	-2.8
3,226,026	+		BT2582	0.37	-3.2
3,226,058	-		BT2582	0.43	+0.3
3,226,058	-		BT2582	0.43	-3.0
3,226,058	-		BT2582	0.43	-1.2
3,226,177	-		BT2582	0.64	-1.8
3,226,370	+				-2.9
3,226,463	+				-2.3
3,226,474	+				+0.1
3,226,474	+				+1.4
3,226,477	+		BT2583	0.10	+0.4
3,226,477	+		BT2583	0.10	-1.8
3,226,550	+		BT2583	0.18	+0.1
3,226,619	-		BT2583	0.25	-2.2
3,226,621	+		BT2583	0.26	-1.2
3,226,624	-		BT2583	0.26	-0.5
3,226,624	-		BT2583	0.26	-2.9
3,226,630	-		BT2583	0.27	+3.0
3,226,702	+		BT2583	0.34	-0.0
3,226,703	-		BT2583	0.34	+0.7
3,226,703	-		BT2583	0.34	-0.9
3,226,703	-		BT2583	0.34	-2.3
3,226,703	-		BT2583	0.34	+1.8
3,226,703	-		BT2583	0.34	-1.6
3,226,851	+		BT2583	0.50	-1.6
3,226,852	-		BT2583	0.50	-2.2
3,226,994	+		BT2583	0.66	+0.3
3,226,995	-		BT2583	0.66	+0.4
3,227,027	-		BT2583	0.69	+1.0
3,227,027	-		BT2583	0.69	-1.2
3,227,093	-		BT2583	0.76	-1.6
3,227,100	-		BT2583	0.77	+2.4
3,227,102	+		BT2583	0.77	-2.4
3,227,201	-		BT2583	0.88	-1.4
3,227,226	+				-1.4
3,227,227	-				-0.1
3,227,227	-				+0.3
3,227,312	-				-2.1
3,227,331	-				-1.8
3,227,331	-				-1.2
3,227,355	-				-2.5
3,227,366	+				-0.6