Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2297

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
2,870,345	+				-1.0
2,870,349	+				-1.6
2,870,352	-				-0.7
2,870,481	+		BT2295	0.56	-1.9
2,870,499	+		BT2295	0.63	-1.0
2,870,503	+		BT2295	0.64	-1.0
2,870,571	+		BT2295	0.89	-2.0
2,870,587	+				-0.2
2,870,612	+				-0.8
2,870,891	+		BT2296	0.47	-2.0
2,871,115	+		BT2296	0.84	+0.7
2,871,115	+		BT2296	0.84	-0.3
2,871,116	-		BT2296	0.85	-0.5
2,871,212	+				-2.0
2,871,265	-				-1.0
2,871,371	+				+0.3
2,871,403	+		BT2297	0.12	-3.4
2,871,404	-		BT2297	0.12	-1.7
2,871,506	+		BT2297	0.18	+0.3
2,871,506	+		BT2297	0.18	+0.4
2,871,506	+		BT2297	0.18	-0.6
2,871,507	-		BT2297	0.18	-1.5
2,871,614	+		BT2297	0.24	+0.1
2,871,719	+		BT2297	0.31	-1.8
2,871,719	+		BT2297	0.31	-2.5
2,871,757	+		BT2297	0.33	-2.4
2,871,758	-		BT2297	0.33	-2.0
2,872,035	-		BT2297	0.50	-1.7
2,872,039	+		BT2297	0.50	-0.3
2,872,039	+		BT2297	0.50	-0.7
2,872,040	-		BT2297	0.50	-0.7
2,872,457	+		BT2297	0.75	-2.4
2,872,458	-		BT2297	0.75	+0.2
2,872,498	+		BT2297	0.78	-1.3
2,872,530	+		BT2297	0.80	+0.9
2,872,559	+		BT2297	0.81	-2.1
2,872,772	-				-0.1
2,872,808	-				-0.7
2,872,808	-				-0.7
2,872,831	-				-1.0
2,872,887	+				-3.2
2,872,887	+				+0.3
2,872,950	+				-1.5
2,872,965	+				+0.9
2,873,035	+				-0.6
2,873,077	+				+0.3
2,873,077	+				-2.0
2,873,078	-				-1.9
2,873,078	-				-1.5
2,873,091	+				+0.3
2,873,092	-				-0.3
2,873,111	+				-0.7
2,873,139	+				-0.5
2,873,149	+				-1.9
2,873,155	+				-1.3
2,873,253	+				-0.4
2,873,264	+				-0.3
2,873,276	+				-1.9
2,873,386	+				-1.3
2,873,404	+				-0.7
2,873,487	+				-0.7