Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1800

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
2,253,520	-		BT1799	0.74	-0.3
2,253,525	+		BT1799	0.74	-0.8
2,253,526	-		BT1799	0.74	+0.8
2,253,536	+		BT1799	0.75	-1.8
2,253,593	+		BT1799	0.77	-2.2
2,253,750	+		BT1799	0.82	-1.8
2,253,755	+		BT1799	0.82	+0.2
2,253,767	+		BT1799	0.83	+0.1
2,253,771	+		BT1799	0.83	-2.3
2,253,772	-		BT1799	0.83	-1.4
2,253,772	-		BT1799	0.83	+0.9
2,253,772	-		BT1799	0.83	-1.7
2,253,772	-		BT1799	0.83	-1.4
2,253,772	-		BT1799	0.83	-2.4
2,253,772	-		BT1799	0.83	-1.8
2,253,774	-		BT1799	0.83	+0.8
2,253,775	+		BT1799	0.83	+0.7
2,253,799	+		BT1799	0.84	-1.3
2,253,817	-		BT1799	0.84	+0.2
2,253,825	+		BT1799	0.85	-1.7
2,253,969	+		BT1799	0.90	-3.4
2,254,024	-				-0.4
2,254,035	+				-1.8
2,254,036	-				+1.6
2,254,036	-				-1.4
2,254,100	-				-0.8
2,254,106	+				-0.5
2,254,107	-				-3.6
2,254,107	-				-0.6
2,254,186	+				+0.4
2,254,194	-				+0.2
2,254,284	+				-1.3
2,254,284	+				-0.3
2,254,284	+				-1.8
2,254,398	+				-0.3
2,254,459	+				+0.2
2,254,472	+				+1.2
2,254,478	-				-1.6
2,254,517	-				-0.8
2,254,520	+				-0.6
2,254,520	+				+0.8
2,254,521	-				-0.8
2,254,522	+				-2.0
2,254,524	+				+0.7
2,254,524	+				-1.4
2,254,534	+				-0.4
2,254,535	-				-1.2
2,254,535	-				-1.6
2,254,537	-				-2.0
2,254,615	-				-0.8
2,254,686	+				-3.2
2,254,688	-				-1.3
2,254,751	+		BT1800	0.13	-0.5
2,254,826	+		BT1800	0.17	+0.5
2,254,826	+		BT1800	0.17	+0.5
2,254,826	+		BT1800	0.17	-0.8
2,254,827	-		BT1800	0.17	+0.2
2,254,834	-		BT1800	0.18	-0.4
2,254,871	+		BT1800	0.20	+0.2
2,254,872	-		BT1800	0.20	-1.8
2,254,885	+		BT1800	0.21	+1.2
2,254,886	-		BT1800	0.21	-1.2
2,254,912	+		BT1800	0.22	-0.4
2,254,985	-		BT1800	0.26	+1.6
2,254,986	+		BT1800	0.26	-0.7
2,254,996	+		BT1800	0.27	+1.2
2,255,062	-		BT1800	0.30	-1.4
2,255,099	-		BT1800	0.32	-2.3
2,255,099	-		BT1800	0.32	-1.6
2,255,111	+		BT1800	0.33	-0.8
2,255,111	+		BT1800	0.33	-1.0
2,255,196	-		BT1800	0.37	-2.3
2,255,233	+		BT1800	0.39	+0.4
2,255,253	-		BT1800	0.40	-1.2
2,255,253	-		BT1800	0.40	-1.5
2,255,265	+		BT1800	0.41	-0.0
2,255,273	+		BT1800	0.41	-1.2
2,255,274	-		BT1800	0.42	-2.5
2,255,274	-		BT1800	0.42	-1.3
2,255,331	+		BT1800	0.45	-1.2
2,255,331	+		BT1800	0.45	+1.2
2,255,336	+		BT1800	0.45	-2.2
2,255,352	+		BT1800	0.46	-2.5
2,255,438	+		BT1800	0.50	-1.4
2,255,472	-		BT1800	0.52	+0.2
2,255,500	+		BT1800	0.54	-1.3
2,255,581	-		BT1800	0.58	+0.6
2,255,581	-		BT1800	0.58	-0.5
2,255,589	+		BT1800	0.59	-1.6
2,255,830	-		BT1800	0.72	-1.8
2,255,839	-		BT1800	0.72	-0.4
2,255,889	-		BT1800	0.75	-0.8
2,256,025	-		BT1800	0.82	+1.2
2,256,037	-		BT1800	0.83	-2.0
2,256,037	-		BT1800	0.83	-0.8
2,256,073	+		BT1800	0.85	-1.2
2,256,226	+				-0.8
2,256,499	+				+1.2
2,256,511	+				-1.8
2,256,545	-				-0.8
2,256,571	-		BT1801	0.11	-1.2
2,256,692	+		BT1801	0.17	+0.2
2,256,713	+		BT1801	0.18	-0.6
2,256,747	-		BT1801	0.20	-2.0
2,256,747	-		BT1801	0.20	-0.3
2,256,747	-		BT1801	0.20	-2.3
2,256,750	+		BT1801	0.20	-1.6
2,256,755	+		BT1801	0.21	+0.4
2,256,763	-		BT1801	0.21	-2.0
2,256,768	-		BT1801	0.21	-3.7
2,256,774	+		BT1801	0.22	-2.2
2,256,774	+		BT1801	0.22	+1.2
2,256,775	-		BT1801	0.22	-3.6
2,256,868	+		BT1801	0.26	-0.4
2,256,870	+		BT1801	0.26	-1.0
2,256,870	+		BT1801	0.26	-0.3
2,256,870	+		BT1801	0.26	-1.1
2,256,984	-		BT1801	0.32	-0.4
2,257,085	-		BT1801	0.37	-0.8
2,257,085	-		BT1801	0.37	-1.4
2,257,090	+		BT1801	0.38	-1.5
2,257,094	+		BT1801	0.38	-1.2
2,257,198	+		BT1801	0.43	-0.4
2,257,219	+		BT1801	0.44	-1.8
2,257,220	-		BT1801	0.44	-2.0
2,257,224	+		BT1801	0.44	-2.7
2,257,225	-		BT1801	0.44	-2.0
2,257,344	-		BT1801	0.51	-1.2