Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0881

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
1,080,121	+				+0.1
1,080,160	-				+0.1
1,080,171	-				-1.6
1,080,188	-				-2.7
1,080,199	+		BT0879	0.10	-0.9
1,080,217	+		BT0879	0.13	-0.9
1,080,218	-		BT0879	0.13	-1.7
1,080,256	+		BT0879	0.19	-0.7
1,080,316	-		BT0879	0.28	-1.2
1,080,357	+		BT0879	0.34	-0.5
1,080,428	-		BT0879	0.44	-1.2
1,080,449	+		BT0879	0.48	-1.0
1,080,449	+		BT0879	0.48	-0.9
1,080,450	-		BT0879	0.48	-1.9
1,080,481	-		BT0879	0.52	-1.5
1,080,679	+		BT0879	0.82	-0.9
1,080,679	+		BT0879	0.82	-0.5
1,080,689	-		BT0879	0.83	-0.9
1,080,804	+				-0.5
1,080,900	+		BT0880	0.37	-0.5
1,080,934	-		BT0880	0.49	+1.8
1,080,934	-		BT0880	0.49	-1.2
1,080,969	+		BT0880	0.62	-0.7
1,081,047	+				+0.1
1,081,177	-		BT0881	0.16	-0.3
1,081,360	+		BT0881	0.60	-0.9
1,081,365	-		BT0881	0.61	-0.9
1,081,415	-		BT0881	0.73	+1.9
1,081,418	-		BT0881	0.74	+1.9
1,081,585	+				-3.2
1,082,263	+		BT0882	0.58	+1.9