Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03280

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03275 and RALBFv3_RS03280 are separated by 73 nucleotidesRALBFv3_RS03280 and RALBFv3_RS03285 are separated by 59 nucleotidesRALBFv3_RS03285 and RALBFv3_RS03290 are separated by 293 nucleotides RALBFv3_RS03275: RALBFv3_RS03275 - class 1 fructose-bisphosphatase, at 718,322 to 719,329 _RS03275 RALBFv3_RS03280: RALBFv3_RS03280 - tRNA-Thr, at 719,403 to 719,478 _RS03280 RALBFv3_RS03285: RALBFv3_RS03285 - peptidoglycan-binding protein LysM, at 719,538 to 720,014 _RS03285 RALBFv3_RS03290: RALBFv3_RS03290 - esterase, at 720,308 to 721,339 _RS03290 Position (kb) 719 720Strain fitness (log2 ratio) -1 0 1at 719.329 kb on - strandat 719.626 kb on + strand, within RALBFv3_RS03285at 719.691 kb on - strand, within RALBFv3_RS03285at 719.884 kb on + strand, within RALBFv3_RS03285at 719.884 kb on + strand, within RALBFv3_RS03285at 719.884 kb on + strand, within RALBFv3_RS03285at 719.885 kb on - strand, within RALBFv3_RS03285at 719.885 kb on - strand, within RALBFv3_RS03285at 719.885 kb on - strand, within RALBFv3_RS03285at 719.885 kb on - strand, within RALBFv3_RS03285at 720.473 kb on + strand, within RALBFv3_RS03290

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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719,329 - -1.3
719,626 + RALBFv3_RS03285 0.18 +0.8
719,691 - RALBFv3_RS03285 0.32 -0.5
719,884 + RALBFv3_RS03285 0.73 -0.7
719,884 + RALBFv3_RS03285 0.73 +0.7
719,884 + RALBFv3_RS03285 0.73 +0.3
719,885 - RALBFv3_RS03285 0.73 -0.2
719,885 - RALBFv3_RS03285 0.73 -0.0
719,885 - RALBFv3_RS03285 0.73 +0.8
719,885 - RALBFv3_RS03285 0.73 +0.3
720,473 + RALBFv3_RS03290 0.16 -0.3

Or see this region's nucleotide sequence