Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01195

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01185 and RALBFv3_RS01190 are separated by 22 nucleotidesRALBFv3_RS01190 and RALBFv3_RS01195 overlap by 1 nucleotidesRALBFv3_RS01195 and RALBFv3_RS01200 are separated by 41 nucleotides RALBFv3_RS01185: RALBFv3_RS01185 - peptide-methionine (R)-S-oxide reductase, at 266,766 to 267,152 _RS01185 RALBFv3_RS01190: RALBFv3_RS01190 - septation protein A, at 267,175 to 267,735 _RS01190 RALBFv3_RS01195: RALBFv3_RS01195 - BolA family transcriptional regulator, at 267,735 to 268,007 _RS01195 RALBFv3_RS01200: RALBFv3_RS01200 - peptidyl-prolyl cis-trans isomerase, at 268,049 to 268,846 _RS01200 Position (kb) 267 268 269Strain fitness (log2 ratio) -1 0 1at 266.868 kb on + strand, within RALBFv3_RS01185at 266.970 kb on + strand, within RALBFv3_RS01185at 267.927 kb on + strand, within RALBFv3_RS01195at 267.927 kb on + strand, within RALBFv3_RS01195at 267.927 kb on + strand, within RALBFv3_RS01195at 267.928 kb on - strand, within RALBFv3_RS01195at 267.928 kb on - strand, within RALBFv3_RS01195at 268.005 kb on + strandat 268.005 kb on + strandat 268.359 kb on - strand, within RALBFv3_RS01200at 268.359 kb on - strand, within RALBFv3_RS01200at 268.442 kb on + strand, within RALBFv3_RS01200at 268.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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266,868 + RALBFv3_RS01185 0.26 +0.0
266,970 + RALBFv3_RS01185 0.53 +0.2
267,927 + RALBFv3_RS01195 0.70 +0.2
267,927 + RALBFv3_RS01195 0.70 -0.6
267,927 + RALBFv3_RS01195 0.70 +0.5
267,928 - RALBFv3_RS01195 0.71 +0.1
267,928 - RALBFv3_RS01195 0.71 -0.8
268,005 + +0.2
268,005 + -1.6
268,359 - RALBFv3_RS01200 0.39 -0.8
268,359 - RALBFv3_RS01200 0.39 +0.8
268,442 + RALBFv3_RS01200 0.49 -1.2
268,985 + -0.8

Or see this region's nucleotide sequence