Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1288

Experiment: KB with Esculin Monohydrate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1287 and Psyr_1288 are separated by 397 nucleotidesPsyr_1288 and Psyr_1289 are separated by 214 nucleotides Psyr_1287: Psyr_1287 - hypothetical protein, at 1,452,259 to 1,452,657 _1287 Psyr_1288: Psyr_1288 - hypothetical protein, at 1,453,055 to 1,453,777 _1288 Psyr_1289: Psyr_1289 - Glutaredoxin, at 1,453,992 to 1,454,732 _1289 Position (kb) 1453 1454Strain fitness (log2 ratio) -3 -2 -1 0 1at 1452.075 kb on - strandat 1452.254 kb on - strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.258 kb on + strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.259 kb on - strandat 1452.293 kb on + strandat 1452.293 kb on + strandat 1452.365 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.367 kb on + strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.368 kb on - strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.371 kb on + strand, within Psyr_1287at 1452.372 kb on - strand, within Psyr_1287at 1452.399 kb on + strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.425 kb on - strand, within Psyr_1287at 1452.532 kb on + strand, within Psyr_1287at 1452.629 kb on - strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.768 kb on + strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.769 kb on - strandat 1452.812 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.835 kb on + strandat 1452.836 kb on - strandat 1452.836 kb on - strandat 1452.853 kb on - strandat 1452.853 kb on - strandat 1452.881 kb on - strandat 1452.972 kb on + strandat 1453.008 kb on - strandat 1453.008 kb on - strandat 1453.024 kb on + strandat 1453.135 kb on + strand, within Psyr_1288at 1453.136 kb on - strand, within Psyr_1288at 1453.235 kb on + strand, within Psyr_1288at 1453.235 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.238 kb on + strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.239 kb on - strand, within Psyr_1288at 1453.244 kb on - strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.292 kb on + strand, within Psyr_1288at 1453.293 kb on - strand, within Psyr_1288at 1453.312 kb on + strand, within Psyr_1288at 1453.364 kb on - strand, within Psyr_1288at 1453.450 kb on - strand, within Psyr_1288at 1453.520 kb on - strand, within Psyr_1288at 1453.538 kb on + strand, within Psyr_1288at 1453.539 kb on - strand, within Psyr_1288at 1453.544 kb on + strand, within Psyr_1288at 1453.577 kb on - strand, within Psyr_1288at 1453.652 kb on + strand, within Psyr_1288at 1453.749 kb on - strandat 1453.749 kb on - strandat 1453.749 kb on - strandat 1453.749 kb on - strandat 1453.775 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.903 kb on + strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.904 kb on - strandat 1453.930 kb on + strandat 1453.981 kb on + strandat 1453.982 kb on - strandat 1454.730 kb on + strandat 1454.730 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Esculin Monohydrate 10 mM
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1,452,075 - +1.1
1,452,254 - -0.2
1,452,258 + -0.1
1,452,258 + -0.9
1,452,258 + +1.4
1,452,258 + -0.4
1,452,258 + -0.2
1,452,259 - -0.5
1,452,259 - -0.8
1,452,259 - -1.2
1,452,259 - +0.8
1,452,259 - -0.2
1,452,293 + -0.4
1,452,293 + +0.1
1,452,365 + Psyr_1287 0.27 -0.7
1,452,367 + Psyr_1287 0.27 -0.5
1,452,367 + Psyr_1287 0.27 +0.3
1,452,367 + Psyr_1287 0.27 -1.5
1,452,367 + Psyr_1287 0.27 +0.1
1,452,367 + Psyr_1287 0.27 -0.4
1,452,367 + Psyr_1287 0.27 -0.4
1,452,367 + Psyr_1287 0.27 -0.4
1,452,367 + Psyr_1287 0.27 +0.5
1,452,367 + Psyr_1287 0.27 +0.1
1,452,367 + Psyr_1287 0.27 -0.2
1,452,368 - Psyr_1287 0.27 +0.6
1,452,368 - Psyr_1287 0.27 +0.0
1,452,368 - Psyr_1287 0.27 -0.8
1,452,368 - Psyr_1287 0.27 -1.4
1,452,368 - Psyr_1287 0.27 -0.4
1,452,368 - Psyr_1287 0.27 -0.4
1,452,368 - Psyr_1287 0.27 +1.4
1,452,371 + Psyr_1287 0.28 +0.3
1,452,371 + Psyr_1287 0.28 -0.7
1,452,372 - Psyr_1287 0.28 -0.2
1,452,399 + Psyr_1287 0.35 -1.6
1,452,425 - Psyr_1287 0.42 +0.7
1,452,425 - Psyr_1287 0.42 -1.7
1,452,532 + Psyr_1287 0.68 +0.8
1,452,629 - -0.1
1,452,768 + +0.1
1,452,768 + -0.1
1,452,768 + -0.2
1,452,768 + -0.4
1,452,769 - -0.3
1,452,769 - +0.2
1,452,769 - -1.7
1,452,769 - -2.0
1,452,812 + -0.2
1,452,835 + +0.4
1,452,835 + +0.6
1,452,835 + +0.9
1,452,835 + -1.4
1,452,835 + +1.2
1,452,835 + +0.1
1,452,836 - +0.1
1,452,836 - -0.3
1,452,853 - +0.4
1,452,853 - -0.5
1,452,881 - +0.7
1,452,972 + +0.4
1,453,008 - -0.7
1,453,008 - +0.2
1,453,024 + +0.8
1,453,135 + Psyr_1288 0.11 +0.2
1,453,136 - Psyr_1288 0.11 +0.1
1,453,235 + Psyr_1288 0.25 -0.7
1,453,235 + Psyr_1288 0.25 -2.1
1,453,238 + Psyr_1288 0.25 -0.5
1,453,238 + Psyr_1288 0.25 -0.2
1,453,238 + Psyr_1288 0.25 -0.9
1,453,239 - Psyr_1288 0.25 -2.8
1,453,239 - Psyr_1288 0.25 -0.7
1,453,239 - Psyr_1288 0.25 -2.4
1,453,239 - Psyr_1288 0.25 +0.1
1,453,244 - Psyr_1288 0.26 -0.2
1,453,292 + Psyr_1288 0.33 -1.1
1,453,292 + Psyr_1288 0.33 -0.1
1,453,292 + Psyr_1288 0.33 +0.5
1,453,293 - Psyr_1288 0.33 +0.9
1,453,312 + Psyr_1288 0.36 -1.7
1,453,364 - Psyr_1288 0.43 -3.1
1,453,450 - Psyr_1288 0.55 -0.6
1,453,520 - Psyr_1288 0.64 -0.9
1,453,538 + Psyr_1288 0.67 +0.5
1,453,539 - Psyr_1288 0.67 -0.5
1,453,544 + Psyr_1288 0.68 +0.3
1,453,577 - Psyr_1288 0.72 -1.2
1,453,652 + Psyr_1288 0.83 +0.3
1,453,749 - -0.2
1,453,749 - -0.0
1,453,749 - -2.2
1,453,749 - -1.0
1,453,775 + +1.1
1,453,903 + +0.1
1,453,903 + +0.4
1,453,903 + +0.3
1,453,903 + -0.6
1,453,903 + +1.2
1,453,903 + -2.2
1,453,903 + -0.1
1,453,904 - +0.7
1,453,904 - -0.1
1,453,904 - -1.5
1,453,904 - -1.2
1,453,930 + +0.1
1,453,981 + -0.2
1,453,982 - -1.1
1,454,730 + +0.7
1,454,730 + -0.6

Or see this region's nucleotide sequence