Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0928

Experiment: KB with Esculin Monohydrate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0927 and Psyr_0928 are separated by 42 nucleotides Psyr_0927: Psyr_0927 - hypothetical protein, at 1,054,719 to 1,055,612 _0927 Psyr_0928: Psyr_0928 - hypothetical protein, at 1,055,655 to 1,057,292 _0928 Position (kb) 1055 1056 1057 1058Strain fitness (log2 ratio) -3 -2 -1 0 1at 1054.668 kb on - strandat 1054.668 kb on - strandat 1055.049 kb on + strand, within Psyr_0927at 1055.061 kb on - strand, within Psyr_0927at 1055.135 kb on + strand, within Psyr_0927at 1055.245 kb on - strand, within Psyr_0927at 1055.375 kb on + strand, within Psyr_0927at 1055.376 kb on - strand, within Psyr_0927at 1055.376 kb on - strand, within Psyr_0927at 1055.416 kb on - strand, within Psyr_0927at 1055.560 kb on - strandat 1055.563 kb on + strandat 1055.657 kb on - strandat 1055.852 kb on - strand, within Psyr_0928at 1055.852 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1056.035 kb on + strand, within Psyr_0928at 1056.051 kb on + strand, within Psyr_0928at 1056.086 kb on - strand, within Psyr_0928at 1056.086 kb on - strand, within Psyr_0928at 1056.088 kb on + strand, within Psyr_0928at 1056.089 kb on - strand, within Psyr_0928at 1056.090 kb on + strand, within Psyr_0928at 1056.091 kb on - strand, within Psyr_0928at 1056.091 kb on - strand, within Psyr_0928at 1056.135 kb on + strand, within Psyr_0928at 1056.152 kb on - strand, within Psyr_0928at 1056.288 kb on - strand, within Psyr_0928at 1056.325 kb on + strand, within Psyr_0928at 1056.367 kb on + strand, within Psyr_0928at 1056.368 kb on - strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.424 kb on + strand, within Psyr_0928at 1056.434 kb on - strand, within Psyr_0928at 1056.449 kb on + strand, within Psyr_0928at 1056.453 kb on + strand, within Psyr_0928at 1056.453 kb on + strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.533 kb on + strand, within Psyr_0928at 1056.574 kb on + strand, within Psyr_0928at 1056.575 kb on - strand, within Psyr_0928at 1056.575 kb on - strand, within Psyr_0928at 1056.617 kb on - strand, within Psyr_0928at 1056.661 kb on + strand, within Psyr_0928at 1056.717 kb on + strand, within Psyr_0928at 1056.717 kb on + strand, within Psyr_0928at 1056.743 kb on - strand, within Psyr_0928at 1056.767 kb on - strand, within Psyr_0928at 1056.767 kb on - strand, within Psyr_0928at 1056.835 kb on - strand, within Psyr_0928at 1056.867 kb on + strand, within Psyr_0928at 1056.867 kb on + strand, within Psyr_0928at 1056.877 kb on + strand, within Psyr_0928at 1056.906 kb on + strand, within Psyr_0928at 1057.009 kb on + strand, within Psyr_0928at 1057.009 kb on + strand, within Psyr_0928at 1057.010 kb on - strand, within Psyr_0928at 1057.030 kb on + strand, within Psyr_0928at 1057.031 kb on - strand, within Psyr_0928at 1057.070 kb on + strand, within Psyr_0928at 1057.099 kb on - strand, within Psyr_0928at 1057.101 kb on + strand, within Psyr_0928at 1057.117 kb on + strand, within Psyr_0928at 1057.117 kb on + strand, within Psyr_0928at 1057.117 kb on + strand, within Psyr_0928at 1057.121 kb on + strand, within Psyr_0928at 1057.122 kb on - strand, within Psyr_0928at 1057.164 kb on - strandat 1057.344 kb on + strandat 1057.344 kb on + strandat 1057.408 kb on + strandat 1057.409 kb on - strandat 1057.504 kb on - strandat 1057.556 kb on + strandat 1057.568 kb on - strandat 1057.575 kb on + strandat 1057.796 kb on - strandat 1057.796 kb on - strandat 1057.842 kb on + strandat 1057.843 kb on - strandat 1057.924 kb on - strandat 1057.943 kb on + strandat 1057.944 kb on - strandat 1057.976 kb on - strandat 1057.994 kb on + strandat 1058.212 kb on + strandat 1058.241 kb on - strandat 1058.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Esculin Monohydrate 10 mM
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1,054,668 - -0.8
1,054,668 - -1.0
1,055,049 + Psyr_0927 0.37 -0.9
1,055,061 - Psyr_0927 0.38 -0.2
1,055,135 + Psyr_0927 0.47 -1.8
1,055,245 - Psyr_0927 0.59 -0.3
1,055,375 + Psyr_0927 0.73 +0.5
1,055,376 - Psyr_0927 0.73 -1.8
1,055,376 - Psyr_0927 0.73 -2.2
1,055,416 - Psyr_0927 0.78 +0.3
1,055,560 - -0.5
1,055,563 + -0.2
1,055,657 - -1.5
1,055,852 - Psyr_0928 0.12 -0.0
1,055,852 - Psyr_0928 0.12 -0.5
1,055,982 - Psyr_0928 0.20 -0.1
1,055,982 - Psyr_0928 0.20 -1.3
1,055,982 - Psyr_0928 0.20 -0.7
1,056,035 + Psyr_0928 0.23 -1.8
1,056,051 + Psyr_0928 0.24 +0.3
1,056,086 - Psyr_0928 0.26 -0.0
1,056,086 - Psyr_0928 0.26 -1.3
1,056,088 + Psyr_0928 0.26 -0.2
1,056,089 - Psyr_0928 0.26 -0.1
1,056,090 + Psyr_0928 0.27 -0.2
1,056,091 - Psyr_0928 0.27 -0.4
1,056,091 - Psyr_0928 0.27 -0.9
1,056,135 + Psyr_0928 0.29 -1.5
1,056,152 - Psyr_0928 0.30 +0.6
1,056,288 - Psyr_0928 0.39 -1.1
1,056,325 + Psyr_0928 0.41 -0.9
1,056,367 + Psyr_0928 0.43 -0.2
1,056,368 - Psyr_0928 0.44 -1.3
1,056,375 + Psyr_0928 0.44 -0.9
1,056,375 + Psyr_0928 0.44 +0.3
1,056,375 + Psyr_0928 0.44 -0.2
1,056,424 + Psyr_0928 0.47 -0.9
1,056,434 - Psyr_0928 0.48 -3.3
1,056,449 + Psyr_0928 0.48 -0.7
1,056,453 + Psyr_0928 0.49 +0.5
1,056,453 + Psyr_0928 0.49 +0.5
1,056,454 - Psyr_0928 0.49 -1.5
1,056,454 - Psyr_0928 0.49 -2.1
1,056,454 - Psyr_0928 0.49 -2.5
1,056,533 + Psyr_0928 0.54 +0.2
1,056,574 + Psyr_0928 0.56 -0.9
1,056,575 - Psyr_0928 0.56 +0.1
1,056,575 - Psyr_0928 0.56 -2.3
1,056,617 - Psyr_0928 0.59 -1.0
1,056,661 + Psyr_0928 0.61 +0.1
1,056,717 + Psyr_0928 0.65 +1.1
1,056,717 + Psyr_0928 0.65 -0.4
1,056,743 - Psyr_0928 0.66 -0.9
1,056,767 - Psyr_0928 0.68 -1.1
1,056,767 - Psyr_0928 0.68 -1.9
1,056,835 - Psyr_0928 0.72 -2.3
1,056,867 + Psyr_0928 0.74 +1.1
1,056,867 + Psyr_0928 0.74 -0.6
1,056,877 + Psyr_0928 0.75 -0.4
1,056,906 + Psyr_0928 0.76 -0.3
1,057,009 + Psyr_0928 0.83 +0.2
1,057,009 + Psyr_0928 0.83 -0.8
1,057,010 - Psyr_0928 0.83 -0.9
1,057,030 + Psyr_0928 0.84 -2.1
1,057,031 - Psyr_0928 0.84 -1.7
1,057,070 + Psyr_0928 0.86 -0.4
1,057,099 - Psyr_0928 0.88 -0.7
1,057,101 + Psyr_0928 0.88 -0.5
1,057,117 + Psyr_0928 0.89 -1.4
1,057,117 + Psyr_0928 0.89 -0.9
1,057,117 + Psyr_0928 0.89 -1.0
1,057,121 + Psyr_0928 0.89 -0.5
1,057,122 - Psyr_0928 0.90 -1.1
1,057,164 - -1.6
1,057,344 + -1.3
1,057,344 + -2.1
1,057,408 + +0.6
1,057,409 - -1.5
1,057,504 - -2.8
1,057,556 + +0.1
1,057,568 - +1.2
1,057,575 + -0.7
1,057,796 - -0.1
1,057,796 - -1.1
1,057,842 + -1.9
1,057,843 - +0.1
1,057,924 - -0.1
1,057,943 + +1.1
1,057,944 - -0.9
1,057,976 - -1.1
1,057,994 + -0.6
1,058,212 + +0.2
1,058,241 - -0.3
1,058,274 - -0.3

Or see this region's nucleotide sequence