Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_819 and Pf1N1B4_820 are separated by 331 nucleotides Pf1N1B4_820 and Pf1N1B4_821 are separated by 212 nucleotides
Pf1N1B4_819 - Benzoate transport protein, at 936,605 to 937,810
_819
Pf1N1B4_820 - Glucose-selective porin OprB, at 938,142 to 939,479
_820
Pf1N1B4_821 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 939,692 to 942,100
_821
Position (kb) 938
939
940 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 937.245 kb on + strand, within Pf1N1B4_819 at 937.249 kb on + strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.326 kb on - strand at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.373 kb on - strand, within Pf1N1B4_819 at 937.373 kb on - strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.837 kb on + strand at 937.837 kb on + strand at 937.838 kb on - strand at 937.838 kb on - strand at 937.865 kb on + strand at 937.865 kb on + strand at 937.865 kb on + strand at 937.866 kb on - strand at 937.866 kb on - strand at 937.968 kb on - strand at 937.968 kb on - strand at 937.968 kb on - strand at 937.999 kb on + strand at 938.096 kb on + strand at 938.096 kb on + strand at 938.310 kb on + strand, within Pf1N1B4_820 at 938.311 kb on - strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand at 938.336 kb on - strand at 938.336 kb on - strand, within Pf1N1B4_820 at 938.336 kb on - strand, within Pf1N1B4_820 at 938.574 kb on + strand, within Pf1N1B4_820 at 938.575 kb on - strand, within Pf1N1B4_820 at 938.575 kb on - strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.719 kb on - strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.797 kb on - strand, within Pf1N1B4_820 at 938.934 kb on + strand, within Pf1N1B4_820 at 938.935 kb on - strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.938 kb on - strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.968 kb on - strand, within Pf1N1B4_820 at 939.149 kb on + strand at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.174 kb on + strand, within Pf1N1B4_820 at 939.174 kb on + strand at 939.175 kb on - strand, within Pf1N1B4_820 at 939.352 kb on - strand at 939.354 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.477 kb on + strand at 939.477 kb on + strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.527 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.664 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.756 kb on + strand at 939.756 kb on + strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.759 kb on + strand at 939.760 kb on - strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.821 kb on + strand at 939.821 kb on + strand at 939.919 kb on + strand at 940.244 kb on + strand, within Pf1N1B4_821 at 940.304 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 937,245 + Pf1N1B4_819 0.53 -2.2 937,249 + Pf1N1B4_819 0.53 +1.3 937,290 - Pf1N1B4_819 0.57 +0.1 937,290 - Pf1N1B4_819 0.57 -1.8 937,290 - Pf1N1B4_819 0.57 +0.7 937,326 - -1.4 937,372 + Pf1N1B4_819 0.64 +0.4 937,372 + Pf1N1B4_819 0.64 -1.1 937,372 + Pf1N1B4_819 0.64 +0.8 937,372 + Pf1N1B4_819 0.64 +0.0 937,373 - Pf1N1B4_819 0.64 -1.7 937,373 - Pf1N1B4_819 0.64 +0.7 937,472 + Pf1N1B4_819 0.72 +0.0 937,472 + Pf1N1B4_819 0.72 +0.9 937,472 + Pf1N1B4_819 0.72 -3.0 937,472 + Pf1N1B4_819 0.72 +0.0 937,472 + Pf1N1B4_819 0.72 +0.3 937,502 + Pf1N1B4_819 0.74 -0.3 937,502 + Pf1N1B4_819 0.74 -2.3 937,502 + Pf1N1B4_819 0.74 -1.5 937,502 + Pf1N1B4_819 0.74 +1.0 937,502 + Pf1N1B4_819 0.74 +2.3 937,502 + Pf1N1B4_819 0.74 +2.7 937,502 + Pf1N1B4_819 0.74 +1.5 937,502 + Pf1N1B4_819 0.74 +1.5 937,502 + Pf1N1B4_819 0.74 -0.2 937,503 - Pf1N1B4_819 0.74 -0.3 937,503 - Pf1N1B4_819 0.74 +0.0 937,503 - Pf1N1B4_819 0.74 +2.7 937,503 - Pf1N1B4_819 0.74 -2.2 937,503 - Pf1N1B4_819 0.74 +0.6 937,503 - Pf1N1B4_819 0.74 -1.5 937,760 + +2.0 937,760 + +2.0 937,760 + +0.7 937,760 + -1.0 937,760 + +0.9 937,760 + -1.5 937,760 + -0.7 937,760 + +0.6 937,760 + +0.9 937,761 - -1.5 937,761 - +0.1 937,761 - +0.3 937,761 - -1.0 937,837 + +3.9 937,837 + -1.8 937,838 - -2.0 937,838 - -1.1 937,865 + -1.3 937,865 + +0.1 937,865 + +0.8 937,866 - -1.0 937,866 - +1.7 937,968 - -1.1 937,968 - +0.4 937,968 - -0.9 937,999 + +0.8 938,096 + -0.8 938,096 + -0.3 938,310 + Pf1N1B4_820 0.13 +0.5 938,311 - Pf1N1B4_820 0.13 +0.5 938,335 + Pf1N1B4_820 0.14 +0.3 938,335 + Pf1N1B4_820 0.14 -0.9 938,335 + Pf1N1B4_820 0.14 -0.4 938,335 + -1.4 938,336 - -0.5 938,336 - Pf1N1B4_820 0.14 -0.4 938,336 - Pf1N1B4_820 0.14 -2.1 938,574 + Pf1N1B4_820 0.32 -0.4 938,575 - Pf1N1B4_820 0.32 +0.1 938,575 - Pf1N1B4_820 0.32 +0.6 938,718 + Pf1N1B4_820 0.43 +1.2 938,718 + Pf1N1B4_820 0.43 +0.2 938,719 - Pf1N1B4_820 0.43 -0.1 938,757 + Pf1N1B4_820 0.46 -1.0 938,757 + Pf1N1B4_820 0.46 +0.7 938,757 + Pf1N1B4_820 0.46 -0.5 938,757 + Pf1N1B4_820 0.46 +0.7 938,758 - Pf1N1B4_820 0.46 -0.5 938,758 - Pf1N1B4_820 0.46 +1.6 938,758 - Pf1N1B4_820 0.46 -1.2 938,797 - Pf1N1B4_820 0.49 -1.7 938,934 + Pf1N1B4_820 0.59 +1.8 938,935 - Pf1N1B4_820 0.59 -1.4 938,937 + Pf1N1B4_820 0.59 -1.5 938,937 + Pf1N1B4_820 0.59 -1.4 938,937 + Pf1N1B4_820 0.59 +0.5 938,937 + Pf1N1B4_820 0.59 +1.0 938,937 + Pf1N1B4_820 0.59 +0.3 938,937 + Pf1N1B4_820 0.59 -2.0 938,938 - Pf1N1B4_820 0.59 -3.3 938,940 + Pf1N1B4_820 0.60 -0.2 938,940 + Pf1N1B4_820 0.60 +0.6 938,940 + Pf1N1B4_820 0.60 +1.8 938,940 + Pf1N1B4_820 0.60 +0.7 938,941 - Pf1N1B4_820 0.60 -2.0 938,941 - Pf1N1B4_820 0.60 -0.4 938,967 + Pf1N1B4_820 0.62 -0.7 938,967 + Pf1N1B4_820 0.62 -0.3 938,967 + Pf1N1B4_820 0.62 -0.5 938,967 + Pf1N1B4_820 0.62 +2.0 938,968 - Pf1N1B4_820 0.62 -1.1 939,149 + -0.3 939,153 + Pf1N1B4_820 0.76 -0.7 939,153 + Pf1N1B4_820 0.76 -0.0 939,153 + Pf1N1B4_820 0.76 +0.2 939,153 + Pf1N1B4_820 0.76 +0.8 939,153 + Pf1N1B4_820 0.76 +0.2 939,153 + Pf1N1B4_820 0.76 +1.3 939,153 + Pf1N1B4_820 0.76 -1.1 939,153 + Pf1N1B4_820 0.76 +0.4 939,153 + Pf1N1B4_820 0.76 -0.4 939,153 + Pf1N1B4_820 0.76 +3.1 939,153 + Pf1N1B4_820 0.76 -0.5 939,153 + Pf1N1B4_820 0.76 +1.4 939,153 + Pf1N1B4_820 0.76 -1.4 939,153 + Pf1N1B4_820 0.76 +0.3 939,154 - Pf1N1B4_820 0.76 +0.5 939,154 - Pf1N1B4_820 0.76 +1.4 939,154 - Pf1N1B4_820 0.76 -1.9 939,154 - Pf1N1B4_820 0.76 +0.7 939,154 - Pf1N1B4_820 0.76 -2.0 939,154 - Pf1N1B4_820 0.76 +0.2 939,154 - Pf1N1B4_820 0.76 +0.0 939,174 + Pf1N1B4_820 0.77 +1.0 939,174 + -0.8 939,175 - Pf1N1B4_820 0.77 -1.4 939,352 - -0.9 939,354 + -1.7 939,402 + -1.5 939,402 + -1.0 939,402 + +0.9 939,402 + +0.9 939,402 + -1.0 939,403 - +2.2 939,403 - +1.5 939,403 - -0.5 939,477 + +2.8 939,477 + -1.5 939,478 - +1.6 939,478 - -2.5 939,478 - +0.2 939,527 + +0.9 939,613 + -2.3 939,613 + -0.7 939,613 + -1.1 939,614 - -1.3 939,614 - -1.1 939,614 - -1.0 939,643 + +1.1 939,643 + -0.7 939,643 + -0.3 939,643 + -2.3 939,643 + -1.4 939,644 - +0.0 939,644 - +0.5 939,644 - -1.8 939,644 - -1.3 939,664 + +0.6 939,668 + +1.4 939,668 + +0.4 939,668 + -0.3 939,668 + +2.0 939,669 - -1.6 939,669 - -1.0 939,669 - -0.0 939,669 - -3.7 939,669 - -1.8 939,691 + -2.8 939,691 + +1.5 939,691 + -2.1 939,691 + -0.6 939,691 + -3.0 939,692 - -1.9 939,692 - -2.4 939,692 - -2.0 939,692 - -1.5 939,692 - -2.3 939,692 - -2.1 939,692 - -2.5 939,756 + -1.9 939,756 + -2.7 939,757 - -2.5 939,757 - -2.7 939,757 - -2.6 939,757 - -1.0 939,759 + -2.7 939,760 - +0.0 939,818 + +1.0 939,818 + -1.5 939,818 + +0.3 939,819 - -1.8 939,819 - +0.3 939,819 - -0.8 939,821 + +0.5 939,821 + -2.4 939,919 + -1.3 940,244 + Pf1N1B4_821 0.23 -1.5 940,304 + Pf1N1B4_821 0.25 -0.9 940,388 + Pf1N1B4_821 0.29 -1.6 940,388 + Pf1N1B4_821 0.29 -1.4 940,388 + Pf1N1B4_821 0.29 -2.0 940,388 + Pf1N1B4_821 0.29 +0.3 940,388 + Pf1N1B4_821 0.29 +0.8 940,388 + Pf1N1B4_821 0.29 -3.8 940,388 + Pf1N1B4_821 0.29 -1.5 940,388 + Pf1N1B4_821 0.29 -1.9 940,388 + Pf1N1B4_821 0.29 -0.2 940,389 - Pf1N1B4_821 0.29 -2.0 940,389 - Pf1N1B4_821 0.29 -0.8 940,389 - Pf1N1B4_821 0.29 -1.8 940,389 - Pf1N1B4_821 0.29 +0.2 940,389 - Pf1N1B4_821 0.29 +1.4 940,389 - Pf1N1B4_821 0.29 +0.1 940,389 - Pf1N1B4_821 0.29 -2.0
Or see this region's nucleotide sequence