Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5915 and Pf1N1B4_5916 are separated by 33 nucleotides Pf1N1B4_5916 and Pf1N1B4_5917 are separated by 34 nucleotides Pf1N1B4_5917 and Pf1N1B4_5918 are separated by 323 nucleotides
Pf1N1B4_5915 - Transcriptional regulator, AraC family, at 357,290 to 357,757
_5915
Pf1N1B4_5916 - Similar to non-heme chloroperoxidase, sll5080 homolog, at 357,791 to 358,615
_5916
Pf1N1B4_5917 - Multimeric flavodoxin WrbA, at 358,650 to 359,225
_5917
Pf1N1B4_5918 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 359,549 to 362,353
_5918
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 357.747 kb on + strand at 357.747 kb on + strand at 357.748 kb on - strand at 357.755 kb on + strand at 357.871 kb on - strand at 357.998 kb on - strand at 358.033 kb on - strand, within Pf1N1B4_5916 at 358.149 kb on + strand, within Pf1N1B4_5916 at 358.398 kb on + strand, within Pf1N1B4_5916 at 358.398 kb on + strand, within Pf1N1B4_5916 at 358.399 kb on - strand, within Pf1N1B4_5916 at 358.576 kb on - strand at 358.578 kb on + strand at 358.578 kb on + strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 358.655 kb on - strand at 359.041 kb on + strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.042 kb on - strand, within Pf1N1B4_5917 at 359.123 kb on + strand, within Pf1N1B4_5917 at 359.203 kb on + strand at 359.203 kb on + strand at 359.325 kb on + strand at 359.347 kb on - strand at 359.402 kb on + strand at 359.403 kb on - strand at 359.403 kb on - strand at 359.502 kb on + strand at 359.503 kb on - strand at 359.503 kb on - strand at 359.522 kb on + strand at 359.598 kb on - strand at 359.819 kb on + strand at 359.819 kb on + strand at 359.819 kb on + strand at 359.820 kb on - strand at 359.881 kb on - strand, within Pf1N1B4_5918 at 359.881 kb on - strand, within Pf1N1B4_5918 at 359.924 kb on - strand, within Pf1N1B4_5918
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 357,747 + -1.7 357,747 + -0.2 357,748 - +0.3 357,755 + -0.4 357,871 - +0.7 357,998 - -0.2 358,033 - Pf1N1B4_5916 0.29 +1.4 358,149 + Pf1N1B4_5916 0.43 -2.1 358,398 + Pf1N1B4_5916 0.74 -0.7 358,398 + Pf1N1B4_5916 0.74 -3.0 358,399 - Pf1N1B4_5916 0.74 +0.2 358,576 - -2.0 358,578 + +0.2 358,578 + +0.5 358,655 - +1.1 358,655 - +0.1 358,655 - -0.3 358,655 - -0.6 358,655 - +0.1 359,041 + Pf1N1B4_5917 0.68 +1.2 359,042 - Pf1N1B4_5917 0.68 +0.8 359,042 - Pf1N1B4_5917 0.68 -0.2 359,042 - Pf1N1B4_5917 0.68 +0.5 359,123 + Pf1N1B4_5917 0.82 +1.2 359,203 + -0.1 359,203 + -0.2 359,325 + -1.2 359,347 - +0.4 359,402 + -2.2 359,403 - +1.7 359,403 - -0.3 359,502 + +0.5 359,503 - -0.3 359,503 - -0.9 359,522 + +0.1 359,598 - -0.6 359,819 + -0.2 359,819 + -0.1 359,819 + +0.1 359,820 - -0.5 359,881 - Pf1N1B4_5918 0.12 +0.5 359,881 - Pf1N1B4_5918 0.12 -1.5 359,924 - Pf1N1B4_5918 0.13 +0.0
Or see this region's nucleotide sequence