Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5855

Experiment: nitrogen source nitrite 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5853 and Pf1N1B4_5854 overlap by 17 nucleotidesPf1N1B4_5854 and Pf1N1B4_5855 are separated by 57 nucleotidesPf1N1B4_5855 and Pf1N1B4_5856 are separated by 119 nucleotides Pf1N1B4_5853 - Glutamine synthetase (EC 6.3.1.2), putative, at 285,255 to 286,586 _5853 Pf1N1B4_5854 - FIG00960144: hypothetical protein, at 286,570 to 287,322 _5854 Pf1N1B4_5855 - Putrescine importer, at 287,380 to 288,729 _5855 Pf1N1B4_5856 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 288,849 to 289,880 _5856 Position (kb) 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.570 kb on - strandat 286.607 kb on - strandat 286.624 kb on - strandat 286.819 kb on + strandat 286.819 kb on + strand, within Pf1N1B4_5854at 286.819 kb on + strand, within Pf1N1B4_5854at 286.820 kb on - strand, within Pf1N1B4_5854at 287.051 kb on + strand, within Pf1N1B4_5854at 287.051 kb on + strand, within Pf1N1B4_5854at 287.053 kb on + strand, within Pf1N1B4_5854at 287.053 kb on + strand, within Pf1N1B4_5854at 287.053 kb on + strand, within Pf1N1B4_5854at 287.053 kb on + strand, within Pf1N1B4_5854at 287.053 kb on + strand, within Pf1N1B4_5854at 287.092 kb on + strand, within Pf1N1B4_5854at 287.093 kb on - strand, within Pf1N1B4_5854at 287.173 kb on + strand, within Pf1N1B4_5854at 287.302 kb on + strandat 287.320 kb on + strandat 287.328 kb on + strandat 287.329 kb on - strandat 287.329 kb on - strandat 287.387 kb on + strandat 287.536 kb on + strand, within Pf1N1B4_5855at 287.536 kb on + strand, within Pf1N1B4_5855at 287.537 kb on - strand, within Pf1N1B4_5855at 287.620 kb on + strand, within Pf1N1B4_5855at 287.620 kb on + strand, within Pf1N1B4_5855at 287.621 kb on - strandat 287.661 kb on + strand, within Pf1N1B4_5855at 287.690 kb on - strand, within Pf1N1B4_5855at 287.820 kb on + strand, within Pf1N1B4_5855at 287.821 kb on - strand, within Pf1N1B4_5855at 287.852 kb on + strand, within Pf1N1B4_5855at 287.891 kb on - strand, within Pf1N1B4_5855at 287.922 kb on + strand, within Pf1N1B4_5855at 287.950 kb on + strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 288.194 kb on - strand, within Pf1N1B4_5855at 288.382 kb on + strand, within Pf1N1B4_5855at 288.394 kb on + strand, within Pf1N1B4_5855at 288.394 kb on + strand, within Pf1N1B4_5855at 288.395 kb on - strand, within Pf1N1B4_5855at 288.395 kb on - strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.521 kb on - strand, within Pf1N1B4_5855at 288.521 kb on - strand, within Pf1N1B4_5855at 288.523 kb on + strand, within Pf1N1B4_5855at 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.667 kb on + strandat 288.667 kb on + strandat 288.668 kb on - strandat 288.668 kb on - strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.799 kb on + strandat 288.799 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.843 kb on - strandat 288.859 kb on + strandat 289.023 kb on + strand, within Pf1N1B4_5856at 289.023 kb on + strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.347 kb on + strand, within Pf1N1B4_5856at 289.413 kb on + strandat 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.600 kb on + strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM
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286,570 - +0.5
286,607 - -1.4
286,624 - -1.5
286,819 + -1.2
286,819 + Pf1N1B4_5854 0.33 -1.7
286,819 + Pf1N1B4_5854 0.33 -0.3
286,820 - Pf1N1B4_5854 0.33 +1.2
287,051 + Pf1N1B4_5854 0.64 -1.0
287,051 + Pf1N1B4_5854 0.64 -0.7
287,053 + Pf1N1B4_5854 0.64 -1.2
287,053 + Pf1N1B4_5854 0.64 +1.9
287,053 + Pf1N1B4_5854 0.64 +2.2
287,053 + Pf1N1B4_5854 0.64 +0.5
287,053 + Pf1N1B4_5854 0.64 +0.3
287,092 + Pf1N1B4_5854 0.69 +0.7
287,093 - Pf1N1B4_5854 0.69 +0.8
287,173 + Pf1N1B4_5854 0.80 +0.6
287,302 + +0.6
287,320 + +1.0
287,328 + -1.1
287,329 - +1.3
287,329 - +0.9
287,387 + +1.7
287,536 + Pf1N1B4_5855 0.12 +1.3
287,536 + Pf1N1B4_5855 0.12 +1.7
287,537 - Pf1N1B4_5855 0.12 -3.0
287,620 + Pf1N1B4_5855 0.18 -1.7
287,620 + Pf1N1B4_5855 0.18 +0.7
287,621 - -0.7
287,661 + Pf1N1B4_5855 0.21 +0.2
287,690 - Pf1N1B4_5855 0.23 -1.2
287,820 + Pf1N1B4_5855 0.33 +1.3
287,821 - Pf1N1B4_5855 0.33 +2.4
287,852 + Pf1N1B4_5855 0.35 -2.1
287,891 - Pf1N1B4_5855 0.38 -1.9
287,922 + Pf1N1B4_5855 0.40 -0.4
287,950 + Pf1N1B4_5855 0.42 +1.0
287,951 - Pf1N1B4_5855 0.42 +0.4
287,951 - Pf1N1B4_5855 0.42 +0.5
287,951 - Pf1N1B4_5855 0.42 +1.3
288,194 - Pf1N1B4_5855 0.60 -0.2
288,382 + Pf1N1B4_5855 0.74 -0.4
288,394 + Pf1N1B4_5855 0.75 +1.5
288,394 + Pf1N1B4_5855 0.75 +1.7
288,395 - Pf1N1B4_5855 0.75 +1.6
288,395 - Pf1N1B4_5855 0.75 +1.8
288,520 + Pf1N1B4_5855 0.84 +0.6
288,520 + Pf1N1B4_5855 0.84 +1.4
288,520 + Pf1N1B4_5855 0.84 +0.2
288,520 + Pf1N1B4_5855 0.84 -3.0
288,520 + Pf1N1B4_5855 0.84 +0.4
288,520 + Pf1N1B4_5855 0.84 +0.6
288,520 + Pf1N1B4_5855 0.84 +0.3
288,521 - Pf1N1B4_5855 0.85 +0.4
288,521 - Pf1N1B4_5855 0.85 +1.1
288,523 + Pf1N1B4_5855 0.85 -0.1
288,607 + +1.7
288,607 + +1.1
288,607 + -1.9
288,607 + +1.3
288,607 + +1.2
288,607 + +0.0
288,607 + +1.7
288,608 - +2.3
288,608 - +0.2
288,667 + +1.4
288,667 + +0.6
288,668 - +1.8
288,668 - -0.1
288,671 + -0.7
288,671 + +0.4
288,671 + -1.2
288,671 + -1.3
288,671 + +0.3
288,671 + -2.9
288,799 + +0.3
288,799 + +2.3
288,842 + +1.5
288,842 + +0.1
288,842 + -1.5
288,842 + +2.1
288,842 + -1.7
288,842 + +0.8
288,843 - +0.7
288,859 + -0.6
289,023 + Pf1N1B4_5856 0.17 +0.8
289,023 + Pf1N1B4_5856 0.17 +1.5
289,024 - Pf1N1B4_5856 0.17 -0.3
289,024 - Pf1N1B4_5856 0.17 -0.2
289,209 - Pf1N1B4_5856 0.35 +1.8
289,209 - Pf1N1B4_5856 0.35 +2.3
289,267 + Pf1N1B4_5856 0.41 -2.2
289,267 + Pf1N1B4_5856 0.41 -0.7
289,267 + Pf1N1B4_5856 0.41 -2.4
289,347 + Pf1N1B4_5856 0.48 -0.4
289,413 + -0.2
289,596 + Pf1N1B4_5856 0.72 +1.3
289,596 + Pf1N1B4_5856 0.72 -3.0
289,596 + Pf1N1B4_5856 0.72 +0.3
289,597 - Pf1N1B4_5856 0.72 -0.3
289,597 - Pf1N1B4_5856 0.72 +0.8
289,597 - Pf1N1B4_5856 0.72 +0.6
289,597 - Pf1N1B4_5856 0.72 +0.2
289,597 - Pf1N1B4_5856 0.72 +0.8
289,600 + Pf1N1B4_5856 0.73 +0.3
289,601 - Pf1N1B4_5856 0.73 +1.6
289,601 - Pf1N1B4_5856 0.73 +1.1

Or see this region's nucleotide sequence