Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_558

Experiment: nitrogen source nitrite 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_556 and Pf1N1B4_557 are separated by 83 nucleotidesPf1N1B4_557 and Pf1N1B4_558 are separated by 215 nucleotidesPf1N1B4_558 and Pf1N1B4_559 are separated by 67 nucleotidesPf1N1B4_559 and Pf1N1B4_560 are separated by 65 nucleotides Pf1N1B4_556 - Gluconate permease, at 653,037 to 654,389 _556 Pf1N1B4_557 - Gluconokinase (EC 2.7.1.12), at 654,473 to 655,006 _557 Pf1N1B4_558 - Gluconate utilization system Gnt-I transcriptional repressor, at 655,222 to 656,253 _558 Pf1N1B4_559 - Uncharacterized glutathione S-transferase-like protein, at 656,321 to 656,953 _559 Pf1N1B4_560 - Transcriptional regulators, LysR family, at 657,019 to 657,951 _560 Position (kb) 655 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 654.326 kb on + strandat 654.327 kb on - strandat 654.354 kb on + strandat 654.923 kb on - strand, within Pf1N1B4_557at 655.009 kb on - strandat 655.047 kb on - strandat 655.047 kb on - strandat 655.189 kb on + strandat 655.189 kb on + strandat 655.227 kb on + strandat 655.248 kb on + strandat 655.312 kb on - strandat 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strandat 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strandat 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strand, within Pf1N1B4_558at 655.396 kb on + strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.397 kb on - strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.594 kb on + strand, within Pf1N1B4_558at 655.595 kb on - strand, within Pf1N1B4_558at 655.595 kb on - strand, within Pf1N1B4_558at 655.595 kb on - strand, within Pf1N1B4_558at 655.604 kb on - strand, within Pf1N1B4_558at 655.690 kb on + strand, within Pf1N1B4_558at 655.690 kb on + strand, within Pf1N1B4_558at 655.691 kb on - strand, within Pf1N1B4_558at 655.691 kb on - strand, within Pf1N1B4_558at 655.691 kb on - strand, within Pf1N1B4_558at 655.804 kb on + strand, within Pf1N1B4_558at 655.804 kb on + strand, within Pf1N1B4_558at 655.804 kb on + strand, within Pf1N1B4_558at 655.804 kb on + strandat 655.804 kb on + strand, within Pf1N1B4_558at 655.804 kb on + strand, within Pf1N1B4_558at 655.804 kb on + strand, within Pf1N1B4_558at 655.805 kb on - strand, within Pf1N1B4_558at 655.805 kb on - strand, within Pf1N1B4_558at 655.882 kb on + strand, within Pf1N1B4_558at 655.882 kb on + strand, within Pf1N1B4_558at 656.282 kb on + strandat 656.283 kb on - strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.329 kb on + strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.330 kb on - strandat 656.530 kb on + strand, within Pf1N1B4_559at 656.530 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strandat 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.783 kb on + strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.784 kb on - strand, within Pf1N1B4_559at 656.923 kb on + strandat 657.123 kb on + strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.187 kb on + strand, within Pf1N1B4_560at 657.187 kb on + strand, within Pf1N1B4_560at 657.188 kb on - strand, within Pf1N1B4_560

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM
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654,326 + -2.5
654,327 - -0.5
654,354 + -1.2
654,923 - Pf1N1B4_557 0.84 +0.8
655,009 - -1.0
655,047 - -0.5
655,047 - +1.3
655,189 + -1.8
655,189 + -2.5
655,227 + -1.7
655,248 + -1.2
655,312 - +0.6
655,396 + Pf1N1B4_558 0.17 +1.7
655,396 + Pf1N1B4_558 0.17 +2.0
655,396 + +1.0
655,396 + Pf1N1B4_558 0.17 -1.3
655,396 + +3.7
655,396 + Pf1N1B4_558 0.17 +1.7
655,396 + Pf1N1B4_558 0.17 +1.2
655,396 + Pf1N1B4_558 0.17 +0.2
655,396 + Pf1N1B4_558 0.17 +1.0
655,397 - Pf1N1B4_558 0.17 +0.4
655,397 - Pf1N1B4_558 0.17 +0.9
655,397 - Pf1N1B4_558 0.17 +2.1
655,397 - Pf1N1B4_558 0.17 +0.9
655,397 - Pf1N1B4_558 0.17 +0.7
655,397 - Pf1N1B4_558 0.17 +1.7
655,594 + Pf1N1B4_558 0.36 -0.1
655,594 + Pf1N1B4_558 0.36 -1.3
655,594 + Pf1N1B4_558 0.36 +1.7
655,594 + Pf1N1B4_558 0.36 +1.6
655,594 + Pf1N1B4_558 0.36 +1.6
655,594 + Pf1N1B4_558 0.36 +0.8
655,594 + Pf1N1B4_558 0.36 -0.3
655,594 + Pf1N1B4_558 0.36 -3.1
655,595 - Pf1N1B4_558 0.36 +0.8
655,595 - Pf1N1B4_558 0.36 +1.6
655,595 - Pf1N1B4_558 0.36 +0.8
655,604 - Pf1N1B4_558 0.37 +1.7
655,690 + Pf1N1B4_558 0.45 +2.0
655,690 + Pf1N1B4_558 0.45 +0.8
655,691 - Pf1N1B4_558 0.45 +0.2
655,691 - Pf1N1B4_558 0.45 +0.3
655,691 - Pf1N1B4_558 0.45 +0.5
655,804 + Pf1N1B4_558 0.56 +1.8
655,804 + Pf1N1B4_558 0.56 +0.5
655,804 + Pf1N1B4_558 0.56 +0.7
655,804 + -1.5
655,804 + Pf1N1B4_558 0.56 +2.0
655,804 + Pf1N1B4_558 0.56 -2.0
655,804 + Pf1N1B4_558 0.56 +1.7
655,805 - Pf1N1B4_558 0.56 +0.9
655,805 - Pf1N1B4_558 0.56 +1.0
655,882 + Pf1N1B4_558 0.64 -0.6
655,882 + Pf1N1B4_558 0.64 +0.2
656,282 + +0.8
656,283 - -2.8
656,329 + +0.1
656,329 + +0.4
656,329 + -0.6
656,329 + -0.2
656,329 + +0.2
656,329 + -0.5
656,329 + -0.7
656,329 + -0.2
656,329 + +0.1
656,330 - +0.1
656,330 - -0.7
656,330 - +1.8
656,330 - -0.3
656,330 - +1.4
656,330 - -1.2
656,330 - -0.7
656,330 - -0.1
656,330 - +1.6
656,330 - -1.3
656,530 + Pf1N1B4_559 0.33 -1.5
656,530 + Pf1N1B4_559 0.33 -0.6
656,783 + Pf1N1B4_559 0.73 -2.3
656,783 + Pf1N1B4_559 0.73 -0.2
656,783 + Pf1N1B4_559 0.73 -0.3
656,783 + Pf1N1B4_559 0.73 -0.2
656,783 + Pf1N1B4_559 0.73 +0.1
656,783 + Pf1N1B4_559 0.73 +1.1
656,783 + Pf1N1B4_559 0.73 +1.5
656,783 + -0.8
656,783 + Pf1N1B4_559 0.73 +0.2
656,783 + Pf1N1B4_559 0.73 -0.2
656,783 + Pf1N1B4_559 0.73 +1.5
656,783 + Pf1N1B4_559 0.73 +1.1
656,783 + Pf1N1B4_559 0.73 +1.2
656,783 + Pf1N1B4_559 0.73 +1.0
656,783 + Pf1N1B4_559 0.73 +1.1
656,783 + Pf1N1B4_559 0.73 +2.2
656,783 + Pf1N1B4_559 0.73 -1.1
656,784 - Pf1N1B4_559 0.73 +0.2
656,784 - Pf1N1B4_559 0.73 +2.4
656,784 - Pf1N1B4_559 0.73 -0.9
656,784 - Pf1N1B4_559 0.73 -1.5
656,784 - Pf1N1B4_559 0.73 -1.9
656,784 - Pf1N1B4_559 0.73 -0.7
656,784 - Pf1N1B4_559 0.73 +0.5
656,784 - Pf1N1B4_559 0.73 -0.6
656,784 - Pf1N1B4_559 0.73 -0.2
656,784 - Pf1N1B4_559 0.73 -0.0
656,784 - Pf1N1B4_559 0.73 -0.7
656,784 - Pf1N1B4_559 0.73 -1.7
656,923 + +0.5
657,123 + Pf1N1B4_560 0.11 +0.3
657,124 - Pf1N1B4_560 0.11 -1.0
657,124 - Pf1N1B4_560 0.11 +0.5
657,124 - Pf1N1B4_560 0.11 -1.8
657,124 - Pf1N1B4_560 0.11 +1.5
657,124 - Pf1N1B4_560 0.11 +1.6
657,124 - Pf1N1B4_560 0.11 +0.4
657,187 + Pf1N1B4_560 0.18 +1.4
657,187 + Pf1N1B4_560 0.18 -1.3
657,188 - Pf1N1B4_560 0.18 +0.9

Or see this region's nucleotide sequence