Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5573 and Pf1N1B4_5574 are separated by 98 nucleotides Pf1N1B4_5574 and Pf1N1B4_5575 are separated by 749 nucleotides
Pf1N1B4_5573 - hypothetical protein, at 344,053 to 344,199
_5573
Pf1N1B4_5574 - hypothetical protein, at 344,298 to 344,504
_5574
Pf1N1B4_5575 - hypothetical protein, at 345,254 to 345,634
_5575
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 343.363 kb on + strand at 343.363 kb on + strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.486 kb on - strand at 343.560 kb on - strand at 343.564 kb on - strand at 343.565 kb on + strand at 343.565 kb on + strand at 343.566 kb on - strand at 343.566 kb on - strand at 343.566 kb on - strand at 343.681 kb on - strand at 343.801 kb on + strand at 343.802 kb on - strand at 343.802 kb on - strand at 343.802 kb on - strand at 343.837 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.920 kb on + strand at 343.920 kb on + strand at 343.963 kb on - strand at 343.992 kb on + strand at 343.992 kb on + strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 343.993 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.252 kb on - strand at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.388 kb on - strand, within Pf1N1B4_5574 at 344.674 kb on + strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.779 kb on - strand at 344.885 kb on + strand at 344.885 kb on + strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.995 kb on - strand at 345.001 kb on + strand at 345.002 kb on - strand at 345.004 kb on + strand at 345.005 kb on - strand at 345.005 kb on - strand at 345.016 kb on - strand at 345.020 kb on - strand at 345.020 kb on - strand at 345.053 kb on - strand at 345.093 kb on + strand at 345.178 kb on - strand at 345.255 kb on + strand at 345.343 kb on - strand, within Pf1N1B4_5575 at 345.378 kb on - strand at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 343,363 + +1.7 343,363 + +3.5 343,364 - -1.4 343,364 - +0.6 343,364 - -0.8 343,486 - +0.6 343,560 - +1.0 343,564 - +0.1 343,565 + -1.1 343,565 + -1.6 343,566 - +0.2 343,566 - +0.2 343,566 - -1.0 343,681 - -0.0 343,801 + -2.0 343,802 - +0.5 343,802 - +0.5 343,802 - -1.3 343,837 - +0.6 343,919 - -0.1 343,919 - +0.2 343,919 - -0.8 343,919 - +0.5 343,919 - +0.2 343,920 + -0.0 343,920 + +0.6 343,963 - +1.3 343,992 + -0.1 343,992 + -2.4 343,993 - +1.2 343,993 - -1.3 343,993 - -0.0 343,993 - +1.1 343,993 - +1.3 343,993 - +1.4 344,252 - -0.4 344,252 - +0.3 344,252 - -2.7 344,252 - -0.5 344,252 - +1.5 344,252 - -0.9 344,362 - Pf1N1B4_5574 0.31 +1.3 344,362 - Pf1N1B4_5574 0.31 +0.9 344,388 - Pf1N1B4_5574 0.43 +1.0 344,674 + +0.5 344,675 - -0.4 344,675 - -0.3 344,675 - -1.0 344,675 - +0.7 344,675 - -1.0 344,779 - +1.6 344,885 + -1.9 344,885 + +0.6 344,886 - +0.3 344,886 - +1.7 344,995 - -1.5 345,001 + +0.3 345,002 - -0.3 345,004 + +1.6 345,005 - +0.9 345,005 - +1.4 345,016 - -1.1 345,020 - -0.7 345,020 - +1.0 345,053 - +0.2 345,093 + -0.4 345,178 - +1.6 345,255 + +1.1 345,343 - Pf1N1B4_5575 0.23 -1.4 345,378 - +0.5 345,380 + Pf1N1B4_5575 0.33 -2.2 345,380 + Pf1N1B4_5575 0.33 -1.8 345,416 - -0.7
Or see this region's nucleotide sequence