Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5157 and Pf1N1B4_5158 are separated by 7 nucleotides Pf1N1B4_5158 and Pf1N1B4_5159 overlap by 25 nucleotides
Pf1N1B4_5157 - Cyclic di-GMP binding protein precursor, at 5,746,575 to 5,748,812
_5157
Pf1N1B4_5158 - Endoglucanase precursor (EC 3.2.1.4), at 5,748,820 to 5,750,061
_5158
Pf1N1B4_5159 - Cellulose synthase operon protein C, at 5,750,037 to 5,753,897
_5159
Position (kb) 5748
5749
5750
5751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5747.934 kb on + strand, within Pf1N1B4_5157 at 5747.934 kb on + strand, within Pf1N1B4_5157 at 5747.934 kb on + strand at 5747.934 kb on + strand, within Pf1N1B4_5157 at 5747.934 kb on + strand, within Pf1N1B4_5157 at 5747.934 kb on + strand, within Pf1N1B4_5157 at 5747.935 kb on - strand, within Pf1N1B4_5157 at 5747.940 kb on + strand, within Pf1N1B4_5157 at 5747.940 kb on + strand, within Pf1N1B4_5157 at 5747.940 kb on + strand at 5748.349 kb on - strand, within Pf1N1B4_5157 at 5748.466 kb on - strand, within Pf1N1B4_5157 at 5748.466 kb on - strand at 5748.466 kb on - strand, within Pf1N1B4_5157 at 5748.654 kb on + strand at 5748.654 kb on + strand at 5748.654 kb on + strand at 5748.655 kb on - strand at 5748.657 kb on + strand at 5748.657 kb on + strand at 5748.657 kb on + strand at 5748.657 kb on + strand at 5748.658 kb on - strand at 5748.658 kb on - strand at 5748.658 kb on - strand at 5748.979 kb on + strand, within Pf1N1B4_5158 at 5748.980 kb on - strand, within Pf1N1B4_5158 at 5749.435 kb on + strand, within Pf1N1B4_5158 at 5749.435 kb on + strand, within Pf1N1B4_5158 at 5749.436 kb on - strand, within Pf1N1B4_5158 at 5749.633 kb on + strand, within Pf1N1B4_5158 at 5749.634 kb on - strand, within Pf1N1B4_5158 at 5749.634 kb on - strand, within Pf1N1B4_5158 at 5749.651 kb on + strand, within Pf1N1B4_5158 at 5749.674 kb on + strand, within Pf1N1B4_5158 at 5749.942 kb on + strand at 5749.942 kb on + strand at 5749.943 kb on - strand at 5749.943 kb on - strand at 5749.943 kb on - strand at 5750.126 kb on - strand at 5750.232 kb on + strand at 5750.493 kb on + strand, within Pf1N1B4_5159 at 5750.494 kb on - strand at 5750.764 kb on - strand, within Pf1N1B4_5159
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 5,747,934 + Pf1N1B4_5157 0.61 -0.5 5,747,934 + Pf1N1B4_5157 0.61 +0.6 5,747,934 + +1.4 5,747,934 + Pf1N1B4_5157 0.61 +0.3 5,747,934 + Pf1N1B4_5157 0.61 -2.2 5,747,934 + Pf1N1B4_5157 0.61 -0.7 5,747,935 - Pf1N1B4_5157 0.61 +2.0 5,747,940 + Pf1N1B4_5157 0.61 +0.6 5,747,940 + Pf1N1B4_5157 0.61 -0.1 5,747,940 + +0.0 5,748,349 - Pf1N1B4_5157 0.79 -2.7 5,748,466 - Pf1N1B4_5157 0.84 +1.0 5,748,466 - +0.9 5,748,466 - Pf1N1B4_5157 0.84 +0.1 5,748,654 + -0.8 5,748,654 + -1.8 5,748,654 + +0.1 5,748,655 - +1.1 5,748,657 + -0.1 5,748,657 + -1.1 5,748,657 + +0.7 5,748,657 + -0.5 5,748,658 - +1.2 5,748,658 - -1.0 5,748,658 - -0.7 5,748,979 + Pf1N1B4_5158 0.13 -0.2 5,748,980 - Pf1N1B4_5158 0.13 -0.1 5,749,435 + Pf1N1B4_5158 0.50 +1.6 5,749,435 + Pf1N1B4_5158 0.50 +1.5 5,749,436 - Pf1N1B4_5158 0.50 +2.5 5,749,633 + Pf1N1B4_5158 0.65 +1.9 5,749,634 - Pf1N1B4_5158 0.66 +1.2 5,749,634 - Pf1N1B4_5158 0.66 -1.8 5,749,651 + Pf1N1B4_5158 0.67 -2.3 5,749,674 + Pf1N1B4_5158 0.69 +1.3 5,749,942 + -0.4 5,749,942 + +1.6 5,749,943 - +0.0 5,749,943 - -0.2 5,749,943 - +0.1 5,750,126 - +0.9 5,750,232 + +0.4 5,750,493 + Pf1N1B4_5159 0.12 +0.2 5,750,494 - +1.0 5,750,764 - Pf1N1B4_5159 0.19 -0.8
Or see this region's nucleotide sequence