Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4846 and Pf1N1B4_4847 are separated by 14 nucleotides Pf1N1B4_4847 and Pf1N1B4_4848 are separated by 26 nucleotides Pf1N1B4_4848 and Pf1N1B4_4849 are separated by 10 nucleotides
Pf1N1B4_4846 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 5,354,376 to 5,355,851
_4846
Pf1N1B4_4847 - Various polyols ABC transporter, ATP-binding component, at 5,355,866 to 5,356,969
_4847
Pf1N1B4_4848 - Various polyols ABC transporter, permease component 2, at 5,356,996 to 5,357,826
_4848
Pf1N1B4_4849 - Various polyols ABC transporter, permease component 1, at 5,357,837 to 5,358,736
_4849
Position (kb) 5355
5356
5357 Strain fitness (log2 ratio) -2
-1
0
1 at 5354.929 kb on + strand at 5354.930 kb on - strand, within Pf1N1B4_4846 at 5355.610 kb on + strand, within Pf1N1B4_4846 at 5355.610 kb on + strand, within Pf1N1B4_4846 at 5355.718 kb on + strand at 5355.719 kb on - strand at 5355.794 kb on - strand at 5356.404 kb on + strand, within Pf1N1B4_4847 at 5356.404 kb on + strand, within Pf1N1B4_4847 at 5356.404 kb on + strand, within Pf1N1B4_4847 at 5356.404 kb on + strand, within Pf1N1B4_4847 at 5356.405 kb on - strand, within Pf1N1B4_4847 at 5356.720 kb on - strand, within Pf1N1B4_4847 at 5356.720 kb on - strand, within Pf1N1B4_4847 at 5356.994 kb on - strand at 5357.342 kb on + strand, within Pf1N1B4_4848 at 5357.343 kb on - strand, within Pf1N1B4_4848 at 5357.343 kb on - strand at 5357.348 kb on + strand, within Pf1N1B4_4848 at 5357.349 kb on - strand, within Pf1N1B4_4848 at 5357.387 kb on + strand, within Pf1N1B4_4848 at 5357.445 kb on - strand, within Pf1N1B4_4848 at 5357.528 kb on + strand, within Pf1N1B4_4848 at 5357.529 kb on - strand, within Pf1N1B4_4848 at 5357.625 kb on - strand at 5357.651 kb on + strand, within Pf1N1B4_4848 at 5357.651 kb on + strand, within Pf1N1B4_4848 at 5357.651 kb on + strand at 5357.652 kb on - strand, within Pf1N1B4_4848
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 5,354,929 + -0.4 5,354,930 - Pf1N1B4_4846 0.38 +0.7 5,355,610 + Pf1N1B4_4846 0.84 +0.5 5,355,610 + Pf1N1B4_4846 0.84 +1.1 5,355,718 + -1.4 5,355,719 - -1.4 5,355,794 - -0.4 5,356,404 + Pf1N1B4_4847 0.49 +1.6 5,356,404 + Pf1N1B4_4847 0.49 +1.3 5,356,404 + Pf1N1B4_4847 0.49 +1.2 5,356,404 + Pf1N1B4_4847 0.49 +1.2 5,356,405 - Pf1N1B4_4847 0.49 -2.4 5,356,720 - Pf1N1B4_4847 0.77 -0.2 5,356,720 - Pf1N1B4_4847 0.77 +0.3 5,356,994 - -1.0 5,357,342 + Pf1N1B4_4848 0.42 +0.6 5,357,343 - Pf1N1B4_4848 0.42 +0.4 5,357,343 - -0.0 5,357,348 + Pf1N1B4_4848 0.42 +0.9 5,357,349 - Pf1N1B4_4848 0.42 +1.1 5,357,387 + Pf1N1B4_4848 0.47 +1.4 5,357,445 - Pf1N1B4_4848 0.54 -0.4 5,357,528 + Pf1N1B4_4848 0.64 -1.0 5,357,529 - Pf1N1B4_4848 0.64 -1.4 5,357,625 - -1.4 5,357,651 + Pf1N1B4_4848 0.79 +0.6 5,357,651 + Pf1N1B4_4848 0.79 -2.0 5,357,651 + +0.7 5,357,652 - Pf1N1B4_4848 0.79 -1.1
Or see this region's nucleotide sequence