Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4488 and Pf1N1B4_4489 are separated by 127 nucleotides Pf1N1B4_4489 and Pf1N1B4_4490 are separated by 57 nucleotides Pf1N1B4_4490 and Pf1N1B4_4491 are separated by 267 nucleotides
Pf1N1B4_4488 - Sensory box histidine kinase/response regulator, at 4,949,952 to 4,952,546
_4488
Pf1N1B4_4489 - Transcriptional regulator, LuxR family, at 4,952,674 to 4,953,339
_4489
Pf1N1B4_4490 - Rhodanese-related sulfurtransferase, at 4,953,397 to 4,953,954
_4490
Pf1N1B4_4491 - ABC transporter permease protein, at 4,954,222 to 4,955,013
_4491
Position (kb)
4952
4953
4954 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4951.713 kb on + strand, within Pf1N1B4_4488 at 4951.842 kb on + strand, within Pf1N1B4_4488 at 4952.304 kb on + strand at 4952.433 kb on + strand at 4952.538 kb on - strand at 4952.907 kb on + strand, within Pf1N1B4_4489 at 4952.966 kb on + strand, within Pf1N1B4_4489 at 4953.051 kb on - strand, within Pf1N1B4_4489 at 4953.376 kb on + strand at 4953.486 kb on + strand, within Pf1N1B4_4490 at 4953.487 kb on - strand, within Pf1N1B4_4490 at 4953.487 kb on - strand, within Pf1N1B4_4490 at 4953.493 kb on + strand, within Pf1N1B4_4490 at 4953.970 kb on + strand at 4953.970 kb on + strand at 4953.971 kb on - strand at 4953.971 kb on - strand at 4953.971 kb on - strand at 4953.971 kb on - strand at 4953.975 kb on - strand at 4954.028 kb on + strand at 4954.036 kb on + strand at 4954.039 kb on + strand at 4954.039 kb on + strand at 4954.040 kb on - strand at 4954.044 kb on + strand at 4954.099 kb on + strand at 4954.099 kb on + strand at 4954.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 4,951,713 + Pf1N1B4_4488 0.68 -1.3 4,951,842 + Pf1N1B4_4488 0.73 -1.4 4,952,304 + +0.8 4,952,433 + +1.3 4,952,538 - +0.8 4,952,907 + Pf1N1B4_4489 0.35 -1.8 4,952,966 + Pf1N1B4_4489 0.44 -0.0 4,953,051 - Pf1N1B4_4489 0.57 -1.5 4,953,376 + -0.3 4,953,486 + Pf1N1B4_4490 0.16 -0.4 4,953,487 - Pf1N1B4_4490 0.16 -1.9 4,953,487 - Pf1N1B4_4490 0.16 -0.6 4,953,493 + Pf1N1B4_4490 0.17 +1.7 4,953,970 + -2.5 4,953,970 + -0.6 4,953,971 - +0.7 4,953,971 - +0.5 4,953,971 - -1.8 4,953,971 - -0.3 4,953,975 - -1.8 4,954,028 + +0.1 4,954,036 + +0.5 4,954,039 + -0.3 4,954,039 + -0.7 4,954,040 - -2.7 4,954,044 + -2.8 4,954,099 + -0.1 4,954,099 + +0.3 4,954,224 - -0.2
Or see this region's nucleotide sequence