Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4332 and Pf1N1B4_4333 are separated by 50 nucleotides Pf1N1B4_4333 and Pf1N1B4_4334 are separated by 356 nucleotides Pf1N1B4_4334 and Pf1N1B4_4335 are separated by 109 nucleotides Pf1N1B4_4335 and Pf1N1B4_4336 are separated by 309 nucleotides
Pf1N1B4_4332 - Transcriptional regulator, AsnC family, at 4,792,388 to 4,792,840
_4332
Pf1N1B4_4333 - hypothetical protein, at 4,792,891 to 4,793,112
_4333
Pf1N1B4_4334 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 4,793,469 to 4,794,452
_4334
Pf1N1B4_4335 - Putative translation initiation inhibitor, yjgF family, at 4,794,562 to 4,794,942
_4335
Pf1N1B4_4336 - FMN-dependent NADH-azoreductase, at 4,795,252 to 4,795,893
_4336
Position (kb) 4793
4794
4795 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4792.474 kb on + strand, within Pf1N1B4_4332 at 4792.697 kb on + strand, within Pf1N1B4_4332 at 4792.698 kb on - strand, within Pf1N1B4_4332 at 4792.893 kb on - strand at 4792.918 kb on + strand, within Pf1N1B4_4333 at 4792.919 kb on - strand, within Pf1N1B4_4333 at 4792.919 kb on - strand, within Pf1N1B4_4333 at 4792.979 kb on - strand, within Pf1N1B4_4333 at 4792.979 kb on - strand, within Pf1N1B4_4333 at 4793.046 kb on + strand, within Pf1N1B4_4333 at 4793.047 kb on - strand at 4793.134 kb on - strand at 4793.376 kb on - strand at 4793.388 kb on + strand at 4793.420 kb on + strand at 4793.421 kb on - strand at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.961 kb on + strand, within Pf1N1B4_4334 at 4793.962 kb on - strand, within Pf1N1B4_4334 at 4793.962 kb on - strand, within Pf1N1B4_4334 at 4794.282 kb on + strand, within Pf1N1B4_4334 at 4794.285 kb on + strand, within Pf1N1B4_4334 at 4794.285 kb on + strand, within Pf1N1B4_4334 at 4794.286 kb on - strand, within Pf1N1B4_4334 at 4794.286 kb on - strand, within Pf1N1B4_4334 at 4794.286 kb on - strand, within Pf1N1B4_4334 at 4794.400 kb on - strand at 4794.401 kb on + strand at 4794.401 kb on + strand at 4794.402 kb on - strand at 4794.419 kb on + strand at 4794.419 kb on + strand at 4794.671 kb on + strand, within Pf1N1B4_4335 at 4794.671 kb on + strand, within Pf1N1B4_4335 at 4794.713 kb on + strand, within Pf1N1B4_4335 at 4794.713 kb on + strand, within Pf1N1B4_4335 at 4794.713 kb on + strand, within Pf1N1B4_4335 at 4794.714 kb on - strand, within Pf1N1B4_4335 at 4794.714 kb on - strand, within Pf1N1B4_4335 at 4794.966 kb on + strand at 4795.190 kb on - strand at 4795.190 kb on - strand at 4795.190 kb on - strand at 4795.195 kb on - strand at 4795.197 kb on - strand at 4795.266 kb on + strand at 4795.267 kb on - strand at 4795.267 kb on - strand at 4795.267 kb on - strand at 4795.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 4,792,474 + Pf1N1B4_4332 0.19 -0.0 4,792,697 + Pf1N1B4_4332 0.68 -1.3 4,792,698 - Pf1N1B4_4332 0.68 +0.1 4,792,893 - +0.3 4,792,918 + Pf1N1B4_4333 0.12 +0.3 4,792,919 - Pf1N1B4_4333 0.13 -1.4 4,792,919 - Pf1N1B4_4333 0.13 -0.3 4,792,979 - Pf1N1B4_4333 0.40 -0.7 4,792,979 - Pf1N1B4_4333 0.40 -2.4 4,793,046 + Pf1N1B4_4333 0.70 -1.0 4,793,047 - +1.2 4,793,134 - -0.2 4,793,376 - -3.2 4,793,388 + -0.6 4,793,420 + +0.4 4,793,421 - +0.5 4,793,961 + Pf1N1B4_4334 0.50 -2.4 4,793,961 + Pf1N1B4_4334 0.50 -0.9 4,793,961 + Pf1N1B4_4334 0.50 -3.7 4,793,962 - Pf1N1B4_4334 0.50 +0.9 4,793,962 - Pf1N1B4_4334 0.50 +0.4 4,794,282 + Pf1N1B4_4334 0.83 -2.0 4,794,285 + Pf1N1B4_4334 0.83 +1.2 4,794,285 + Pf1N1B4_4334 0.83 -2.2 4,794,286 - Pf1N1B4_4334 0.83 +1.5 4,794,286 - Pf1N1B4_4334 0.83 +1.7 4,794,286 - Pf1N1B4_4334 0.83 +1.4 4,794,400 - +0.1 4,794,401 + +0.2 4,794,401 + -1.1 4,794,402 - +0.9 4,794,419 + -2.9 4,794,419 + -2.0 4,794,671 + Pf1N1B4_4335 0.29 +1.4 4,794,671 + Pf1N1B4_4335 0.29 +1.2 4,794,713 + Pf1N1B4_4335 0.40 -0.9 4,794,713 + Pf1N1B4_4335 0.40 +0.4 4,794,713 + Pf1N1B4_4335 0.40 +0.5 4,794,714 - Pf1N1B4_4335 0.40 -1.3 4,794,714 - Pf1N1B4_4335 0.40 +1.1 4,794,966 + +0.9 4,795,190 - -0.1 4,795,190 - +1.0 4,795,190 - -0.2 4,795,195 - +0.6 4,795,197 - -1.3 4,795,266 + -2.8 4,795,267 - -0.6 4,795,267 - +1.7 4,795,267 - -0.3 4,795,400 + +1.7
Or see this region's nucleotide sequence